Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g05
(754 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z84476-1|CAI19959.1| 513|Homo sapiens ret finger protein protein. 34 0.48
Z84474-1|CAB06480.2| 513|Homo sapiens ret finger protein protein. 34 0.48
M16029-1|AAA36786.1| 805|Homo sapiens protein ( Human ret mRNA ... 34 0.48
J03407-1|AAA36564.1| 513|Homo sapiens protein ( Human rfp trans... 34 0.48
BX537153-2|CAI18646.1| 513|Homo sapiens tripartite motif-contai... 34 0.48
BX537153-1|CAI18645.1| 358|Homo sapiens tripartite motif-contai... 34 0.48
BX119924-2|CAM26231.1| 513|Homo sapiens ret finger protein prot... 34 0.48
BX119924-1|CAM26230.1| 358|Homo sapiens ret finger protein prot... 34 0.48
BX005144-2|CAM25872.1| 513|Homo sapiens ret finger protein prot... 34 0.48
BX005144-1|CAM25871.1| 358|Homo sapiens ret finger protein prot... 34 0.48
BX000360-2|CAI18619.1| 513|Homo sapiens tripartite motif-contai... 34 0.48
BX000360-1|CAI18618.1| 358|Homo sapiens tripartite motif-contai... 34 0.48
BC066924-1|AAH66924.1| 513|Homo sapiens tripartite motif-contai... 34 0.48
BC013580-1|AAH13580.1| 513|Homo sapiens tripartite motif-contai... 34 0.48
AL662871-4|CAI18381.1| 513|Homo sapiens tripartite motif-contai... 34 0.48
AL662871-3|CAM25659.1| 358|Homo sapiens tripartite motif-contai... 34 0.48
AL662859-4|CAI17553.1| 513|Homo sapiens tripartite motif-contai... 34 0.48
AL662859-3|CAM24901.1| 358|Homo sapiens tripartite motif-contai... 34 0.48
AF230394-1|AAG50173.1| 358|Homo sapiens tripartite motif protei... 34 0.48
AF230393-1|AAG50172.1| 513|Homo sapiens tripartite motif protei... 34 0.48
AB209885-1|BAD93122.1| 382|Homo sapiens ret finger protein isof... 34 0.48
>Z84476-1|CAI19959.1| 513|Homo sapiens ret finger protein protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>Z84474-1|CAB06480.2| 513|Homo sapiens ret finger protein protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>M16029-1|AAA36786.1| 805|Homo sapiens protein ( Human ret mRNA
encoding a tyrosine kinase, partial cds. ).
Length = 805
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 39 ICCACLARCWGTAETNVSCPQCRETF 64
>J03407-1|AAA36564.1| 513|Homo sapiens protein ( Human rfp
transforming protein mRNA, complete cds. ).
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX537153-2|CAI18646.1| 513|Homo sapiens tripartite
motif-containing 27 protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX537153-1|CAI18645.1| 358|Homo sapiens tripartite
motif-containing 27 protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX119924-2|CAM26231.1| 513|Homo sapiens ret finger protein
protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX119924-1|CAM26230.1| 358|Homo sapiens ret finger protein
protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX005144-2|CAM25872.1| 513|Homo sapiens ret finger protein
protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX005144-1|CAM25871.1| 358|Homo sapiens ret finger protein
protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX000360-2|CAI18619.1| 513|Homo sapiens tripartite
motif-containing 27 protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BX000360-1|CAI18618.1| 358|Homo sapiens tripartite
motif-containing 27 protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BC066924-1|AAH66924.1| 513|Homo sapiens tripartite
motif-containing 27 protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>BC013580-1|AAH13580.1| 513|Homo sapiens tripartite
motif-containing 27 protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AL662871-4|CAI18381.1| 513|Homo sapiens tripartite
motif-containing 27 protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AL662871-3|CAM25659.1| 358|Homo sapiens tripartite
motif-containing 27 protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AL662859-4|CAI17553.1| 513|Homo sapiens tripartite
motif-containing 27 protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AL662859-3|CAM24901.1| 358|Homo sapiens tripartite
motif-containing 27 protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AF230394-1|AAG50173.1| 358|Homo sapiens tripartite motif protein
TRIM27 beta protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AF230393-1|AAG50172.1| 513|Homo sapiens tripartite motif protein
TRIM27 alpha protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 35 ICCACLARCWGTAETNVSCPQCRETF 60
>AB209885-1|BAD93122.1| 382|Homo sapiens ret finger protein isoform
beta variant protein.
Length = 382
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 752 ICNACCVTMWKTATTHAKCPACRTSY 675
IC AC W TA T+ CP CR ++
Sbjct: 102 ICCACLARCWGTAETNVSCPQCRETF 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,855,165
Number of Sequences: 237096
Number of extensions: 2643828
Number of successful extensions: 6258
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6239
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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