Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g02
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 235 5e-63
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 235 5e-63
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 36 0.004
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.57
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 1.7
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 3.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 4.0
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 26 4.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 7.0
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 25 9.3
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 9.3
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 25 9.3
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 235 bits (574), Expect = 5e-63
Identities = 117/167 (70%), Positives = 139/167 (83%)
Frame = -3
Query: 575 IKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSX 396
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNS
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 395 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 216
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 215 QAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
QAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKG
Sbjct: 136 QAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKG 182
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 181 KGSSNSYAIKKKD-ELERVAKSN 202
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 235 bits (574), Expect = 5e-63
Identities = 117/167 (70%), Positives = 139/167 (83%)
Frame = -3
Query: 575 IKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSX 396
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNS
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 395 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 216
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 215 QAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
QAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKG
Sbjct: 136 QAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKG 182
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 181 KGSSNSYAIKKKD-ELERVAKSN 202
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = -3
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 261
V+ L N M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 360 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 262
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 338 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 186
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 268 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFXAQV 152
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 411 PYKLXNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 289
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 596 QAADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYA 453
+ ADI + FGR ++++ + + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 461 RYAHKRFRKAQCPIVERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIH 321
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 75 VHLTPTPSKRRTETG 31
V TP P+KRRT+TG
Sbjct: 21 VEPTPKPTKRRTKTG 35
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 434 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYXRLAHRXNSICRKA*FXECRRL 595
L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQ-LVTVSCRHSSVIQKSYGSEKRYL 199
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 86 AAKGFI*LLRHQKEGPRLEACC*IQSV 6
A F LL HQKE R EAC I ++
Sbjct: 333 ALNAFPSLLSHQKENIRKEACWTISNI 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,509
Number of Sequences: 5004
Number of extensions: 47551
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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