Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g02
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 283 8e-77
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 277 4e-75
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 32 0.45
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 31 1.0
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 7.2
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 28 7.2
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 283 bits (694), Expect = 8e-77
Identities = 136/169 (80%), Positives = 151/169 (89%), Gaps = 1/169 (0%)
Frame = -3
Query: 578 EIKLFGRWSXYDVQVXDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 402
E+KLF RWS DVQV D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 401 SXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 222
S MMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 221 RRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
RRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKG
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKG 178
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAK+N
Sbjct: 177 KGSSNSYAIKKKD-EIERVAKAN 198
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 277 bits (680), Expect = 4e-75
Identities = 133/168 (79%), Positives = 149/168 (88%), Gaps = 1/168 (0%)
Frame = -3
Query: 575 IKLFGRWSXYDVQVXDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 399
+KLF WS DVQV D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 398 XMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 219
MMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 218 RQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
RQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKG
Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKG 179
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAK+N
Sbjct: 178 KGSSNSYAIKKKD-EIERVAKAN 199
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 133 LXAASRAPVXKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 270
L A+SR P + +I RR+G + + RR+ P +P +R PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 221 RRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
RR+AV + +RR+ A WL GAR A R A E++ +A G
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAG 54
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 309
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 643 T*PRQAAWLWXPCLXHKPPTF 581
T P Q +WLW L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,746
Number of Sequences: 37544
Number of extensions: 325100
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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