Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g02
(643 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 325 7e-89
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 325 7e-89
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 325 7e-89
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 325 7e-89
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 321 2e-87
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 91 3e-18
AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5 pr... 69 1e-11
AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr... 32 2.0
AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens ... 30 8.0
AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens ... 30 8.0
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 325 bits (799), Expect = 7e-89
Identities = 156/175 (89%), Positives = 163/175 (93%)
Frame = -3
Query: 599 PQAADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 420
P A+ +IKLFG+WS DVQ+ D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
VERLTNS MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
GRAGTVRRQAVDVSPLRRVNQAIWLL TGAREAAFRNIKTIAEC+ADELINAAKG
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKG 183
Score = 37.5 bits (83), Expect = 0.040
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 182 KGSSNSYAIKKKD-ELERVAKSN 203
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 325 bits (799), Expect = 7e-89
Identities = 156/175 (89%), Positives = 163/175 (93%)
Frame = -3
Query: 599 PQAADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 420
P A+ +IKLFG+WS DVQ+ D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
VERLTNS MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
GRAGTVRRQAVDVSPLRRVNQAIWLL TGAREAAFRNIKTIAEC+ADELINAAKG
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKG 183
Score = 37.5 bits (83), Expect = 0.040
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 182 KGSSNSYAIKKKD-ELERVAKSN 203
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 325 bits (799), Expect = 7e-89
Identities = 156/175 (89%), Positives = 163/175 (93%)
Frame = -3
Query: 599 PQAADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 420
P A+ +IKLFG+WS DVQ+ D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
VERLTNS MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
GRAGTVRRQAVDVSPLRRVNQAIWLL TGAREAAFRNIKTIAEC+ADELINAAKG
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKG 183
Score = 33.9 bits (74), Expect = 0.49
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSN YAIKK+D + +RVAKSN
Sbjct: 182 KGSSNFYAIKKRD-ELERVAKSN 203
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 325 bits (799), Expect = 7e-89
Identities = 156/175 (89%), Positives = 163/175 (93%)
Frame = -3
Query: 599 PQAADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 420
P A+ +IKLFG+WS DVQ+ D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
VERLTNS MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
GRAGTVRRQAVDVSPLRRVNQAIWLL TGAREAAFRNIKTIAEC+ADELINAAKG
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKG 183
Score = 37.5 bits (83), Expect = 0.040
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 182 KGSSNSYAIKKKD-ELERVAKSN 203
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 321 bits (788), Expect = 2e-87
Identities = 154/175 (88%), Positives = 161/175 (92%)
Frame = -3
Query: 599 PQAADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 420
P A+ +IKLFG+WS DVQ+ D+SLQDYI+VKEKYAKYLPHSAGRYA FRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPI 68
Query: 419 VERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
VERLTNS MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
GRAGTVRRQAVDVSPLRRVNQAIWLL TGAREAAFRNIKTIAEC+ADELINAAKG
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKG 183
Score = 37.5 bits (83), Expect = 0.040
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 182 KGSSNSYAIKKKD-ELERVAKSN 203
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 91.1 bits (216), Expect = 3e-18
Identities = 45/52 (86%), Positives = 45/52 (86%)
Frame = -3
Query: 434 AQCPIVERLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 279
AQCPIVERLTNS MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5
protein.
Length = 55
Score = 68.9 bits (161), Expect = 1e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -3
Query: 176 AIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
AIWLL TGAREAAFRNIKTIAEC+ADELINAAKG
Sbjct: 1 AIWLLCTGAREAAFRNIKTIAECLADELINAAKG 34
Score = 37.5 bits (83), Expect = 0.040
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 79 KGSSNSYAIKKKDRDWKRVAKSN 11
KGSSNSYAIKKKD + +RVAKSN
Sbjct: 33 KGSSNSYAIKKKD-ELERVAKSN 54
>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
protein.
Length = 1640
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 371 CHCSDRASLXSL*GAPRLGTGLYGNACVHTC 463
C C + ++ G R G G YG AC H C
Sbjct: 1423 CSCHNNSTCEPATGTCRCGPGFYGQACEHPC 1453
>AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ44741 fis, clone BRACE3027931. ).
Length = 398
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 544 MCKSXICLCRTTFPLKRSTQNIYLIQLA 461
+CKS C+C +T + ST+ Y QLA
Sbjct: 259 VCKSTYCICNSTHCVCNSTRTAYATQLA 286
>AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ12986 fis, clone NT2RP3000055. ).
Length = 171
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 544 MCKSXICLCRTTFPLKRSTQNIYLIQLA 461
+CKS C+C +T + ST+ Y QLA
Sbjct: 32 VCKSTYCICNSTHCVCNSTRTAYATQLA 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,089,233
Number of Sequences: 237096
Number of extensions: 1698104
Number of successful extensions: 2884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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