Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g02
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   295   1e-80
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z81461-6|CAB03837.1|  272|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  295 bits (725), Expect = 1e-80
 Identities = 141/173 (81%), Positives = 153/173 (88%)
 Frame = -3

Query: 593 AADIXEIKLFGRWSXYDVQVXDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 414
           A +  E+ LFG+WS   V V D+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 413 RLTNSXMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 234
           RL NS MMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 233 AGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAECVADELINAAKG 75
           AGTVRRQAVDV+PLRRVNQAIWLL TGAREAAFRN+KTIAEC+ADELINAAKG
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKG 189



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = -1

Query: 79  KGSSNSYAIKKKDRDWKRVAKSN 11
           KGSSNSYAIKKKD + +RVAKSN
Sbjct: 188 KGSSNSYAIKKKD-ELERVAKSN 209


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 274 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFXAQVHVRLXSEILKQSQSVLQ 101
           S  D + ++ G  V V  +  P   +    S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>Z81461-6|CAB03837.1|  272|Caenorhabditis elegans Hypothetical
           protein C04F12.8 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = -3

Query: 287 VTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLXTGAREAAFRNIKTIAEC 108
           +  I+N+   E ST +    T++ +  D  P  R+N+   ++    R    R  KT+  C
Sbjct: 36  INMIVNATTEEPSTYMQGVDTMKIRIED-HPYARLNEHFDVVADKIRNVKERGGKTLVHC 94

Query: 107 VADELINAAKGFI*LLRHQ 51
           +A    +A+   I L++H+
Sbjct: 95  MAGVSRSASLVMIYLVKHE 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,177
Number of Sequences: 27780
Number of extensions: 282605
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)