Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g01
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 100 3e-22
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 29 0.73
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 28 1.3
SPAC1782.03 |||microfibrillar-associated protein family protein|... 27 2.2
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 3.9
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 5.2
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.0
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 9.0
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 9.0
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 100 bits (239), Expect = 3e-22
Identities = 40/113 (35%), Positives = 68/113 (60%)
Frame = -2
Query: 478 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 299
R + FCK+FN +TA P+P ++ V R++ IH PP S+ + + + KG+
Sbjct: 31 RGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLEKGS 90
Query: 298 MEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIV 140
P+ + G+++LKH+YEIAK+K DP L+ L +C +I TA++ G+++V
Sbjct: 91 SSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLCKSVIGTAKSMGVKVV 143
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 29.1 bits (62), Expect = 0.73
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 574 PFSWISIELPI*TFYY-NFK*CFETNCPIKSI*VRLSFKYFSLKNSSSLQLAL 729
P S + I P+ TF NF+ + N + + + ++ KY+SL +SS+ Q AL
Sbjct: 545 PTSTVDIRSPLGTFAERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRAL 597
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 132 NSLTISIPHVLAVAINIVQISCSDFHSKGGSCCFIF 239
+S I+ PH A AI + SDF SK S F
Sbjct: 380 HSCAINFPHTAATAIQYLLSHISDFQSKSASSVLSF 415
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 145 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKREAKMLRTA 26
++++ KE LE K +EE++ M E+REA+ L+ A
Sbjct: 202 LLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDA 241
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 142 LFQYHMFLQWLSTLYKFLAAISTLKE 219
LF H F +WL TLY++L E
Sbjct: 609 LFADHFFPKWLETLYQWLTEAPNFDE 634
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 139 KELDPKEYGEFLEERKKIVEEQKKMLQEKREAK 41
KE KE +EE+K EQ+++ QE+ +AK
Sbjct: 144 KEKKEKERIRLIEEQKHKENEQRRLKQEQIDAK 176
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 334 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQE 191
F+K AG GA+ PVRE + + E+ + ++ E K ++E
Sbjct: 447 FVKNVAGHLSGAISPVRERQYGVFTRVDSELGRRIREATEAEVKKMEE 494
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 151 IEIVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 47
++I K +D +EY + + + VEE +K LQ+ RE
Sbjct: 421 LKIKKPIDMEEYSKVSGKVFRPVEEMEKELQKIRE 455
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 151 YHMFLQWLSTLYKFLAAISTLKEDPAVLFLLFHTNASKLFSH 276
YH L+W+ T + L +PAVL L H S++ +H
Sbjct: 180 YHEALEWIRTEFGVLVEHVFSLSNPAVLVQLDHL-VSQILAH 220
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 6 INNKLNYAVLNILASRFSCNIFFCSSTIFFLSSRNSPYSLGSNSLTISIP 155
+N L + +++ S +I S ++ RN PY SNSL SIP
Sbjct: 472 LNIALPLMLATLISKWVSDSIIETSIYDAWIQFRNIPYFPSSNSLKFSIP 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,227
Number of Sequences: 5004
Number of extensions: 63289
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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