Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g01
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0315 - 16686830-16687297 104 9e-23
03_01_0152 - 1211859-1211903,1212247-1212443,1213469-1213532,121... 88 8e-18
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 32 0.58
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 31 1.0
11_04_0348 - 16632102-16632188,16632326-16632391,16632487-166325... 29 3.1
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 29 3.1
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 4.1
01_06_0382 - 28884450-28884662,28884681-28885469 29 4.1
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 29 5.4
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 28 7.1
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 28 7.1
>10_08_0315 - 16686830-16687297
Length = 155
Score = 104 bits (249), Expect = 9e-23
Identities = 47/114 (41%), Positives = 69/114 (60%)
Frame = -2
Query: 472 INIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAME 293
+N+ AFCKDFN +T K P+ + D ++ V+ P S+FLK+AAGI +
Sbjct: 42 LNLMAFCKDFNARTQKYKAETPMQVTLTAYKDSTFEFVVKSPSVSWFLKKAAGIETASGR 101
Query: 292 PVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKEL 131
P ++L+H+YEIAK+KQ DP + SL+ +C +I TA + GIEIVK+L
Sbjct: 102 PGHTVVSSLSLRHVYEIAKLKQSDPYCKHMSLEALCKSIIGTANSMGIEIVKDL 155
>03_01_0152 -
1211859-1211903,1212247-1212443,1213469-1213532,
1213630-1213802,1213889-1214075
Length = 221
Score = 87.8 bits (208), Expect = 8e-18
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = -2
Query: 478 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 299
+ +NI +FCK++N KTA K G +P + V D+S+ ++ PPAS L +AAGI KG+
Sbjct: 89 KGVNIMSFCKEYNAKTAE-KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGIEKGS 147
Query: 298 MEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKE-LDPK 122
EP RE GK+T + IA+ K P L KS+ ++ TA GIE+ L+ K
Sbjct: 148 KEPQREKVGKVTADQVRTIAQEKL--PDLNCKSIDSAMRIIAGTAANMGIEVDPPILEKK 205
Query: 121 EYGEFLEERKKI 86
E + + E +
Sbjct: 206 EKMQTISEHSAL 217
>04_01_0126 -
1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 36 NILASRFSCNIFFCS--STIFFLSSRNSPYSLGSNSLTISIPHVLAVAINIVQISCS 200
+IL+ FSCN S TIF L+S +S ++ N+LT IP + NIV I S
Sbjct: 414 HILSLDFSCNKLNGSIPDTIFSLTSLSSILNMSYNALTGVIPESIGRLGNIVSIDLS 470
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = +3
Query: 3 FINNKLNYAVLNILASRFSCNIFFCSSTIFFLSSRNSPYSLGSNSLTISIPHVLAVAINI 182
FI +N A+++I + + N+ F ++ + NS Y L N L S V VA+ +
Sbjct: 302 FIALLVNVAIVSISGTICANNLSFADTSTCSSLTLNSTYVLLKNILGKSSSTVYGVALLV 361
Query: 183 VQISCSDFHSKGGSCCFIFAISYKCFKVIFPLVSLTGS 296
SC S G +S+ + PL+ + S
Sbjct: 362 SGQSCMVATSYAGQYIMQIVLSFVLPFALIPLIKFSSS 399
>11_04_0348 -
16632102-16632188,16632326-16632391,16632487-16632571,
16632951-16633044,16633417-16633474,16633767-16633807,
16633919-16634018
Length = 176
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 136 ELDPKEYGEFLEERKKIVEEQKKMLQEKRE 47
ELDP E+ E + + K+ E+Q KML + R+
Sbjct: 107 ELDPIEFAEKIHAQHKLQEQQLKMLIQMRK 136
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 313 ISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATA 164
I K + +RE +GKI L+ IA+I D P EW + + + T+
Sbjct: 94 IRKSLLLNMREENGKIALQLAALIARIVYFDYPKEWSDVFSVLAQQLQTS 143
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/88 (27%), Positives = 37/88 (42%)
Frame = -2
Query: 334 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTC 155
FL AA P + GK+ +L E+A DP L E+ T L A AR C
Sbjct: 337 FLHHAAATGARGETPRLKKVGKLVDLYLAEVAP----DPSLRPAMFVELATALPAAARDC 392
Query: 154 GIEIVKELDPKEYGEFLEERKKIVEEQK 71
+ + +D + + ++ EE+K
Sbjct: 393 HDALYRAID-----VYFQVHTRLTEEEK 415
>01_06_0382 - 28884450-28884662,28884681-28885469
Length = 333
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 424 IKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSG 272
+K +P P V V+ DR++ +V H P F G G E + G
Sbjct: 209 LKTDLPYPNGVAVSRDRTHLVVAHTVPCQAFRYWLRGTKAGEYELFADLPG 259
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 445 FNEKTANIKQG-IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRET 278
+N + +++Q I T + VNS R+ H+ +HQPP + K P+ ++
Sbjct: 727 WNSGSQSVRQAEIKRATTINVNS-RARHINLHQPPQEKYQKSTFSYDDPTSAPIYQS 782
>04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -2
Query: 139 KELDPKEYGEFLEERKKIVEEQKKMLQEKREAKMLRTA*FSLLLI 5
+++ ++ E LEE++K+ ++Q++ Q REA+M+ A L I
Sbjct: 1008 QKMSDQQQEEDLEEKQKMGDQQQEEDQNPREAEMIEEAPVQLFSI 1052
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 412 IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKIT 263
I L TRV+ + D+ + LV+H+ + + + + PVRE S IT
Sbjct: 957 IILDTRVQFHQDQLHFLVVHETQIAIY--ETTKLEPVKQWPVRENSSPIT 1004
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,613,440
Number of Sequences: 37544
Number of extensions: 347660
Number of successful extensions: 1059
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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