Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g01
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal...   136   8e-32
AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal...   136   8e-32
AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.     136   8e-32
AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal...   136   8e-32
BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal...   135   2e-31
AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal...    63   9e-10
BC015349-1|AAH15349.1|  260|Homo sapiens coiled-coil domain cont...    31   6.0  
AK098567-1|BAC05336.1|  260|Homo sapiens protein ( Homo sapiens ...    31   6.0  

>BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 192

 Score =  136 bits (329), Expect = 8e-32
 Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
 Frame = -2

Query: 481 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 302
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 301 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 128
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 127 PKEYGEFLEERKKIVEEQKK 68
            +E   F +ER   +  QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180


>AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 isoform a variant protein.
          Length = 192

 Score =  136 bits (329), Expect = 8e-32
 Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
 Frame = -2

Query: 481 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 302
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 301 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 128
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 127 PKEYGEFLEERKKIVEEQKK 68
            +E   F +ER   +  QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180


>AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.
          Length = 192

 Score =  136 bits (329), Expect = 8e-32
 Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
 Frame = -2

Query: 481 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 302
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 301 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 128
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 127 PKEYGEFLEERKKIVEEQKK 68
            +E   F +ER   +  QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180


>AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 (L11mt) protein.
          Length = 192

 Score =  136 bits (329), Expect = 8e-32
 Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
 Frame = -2

Query: 481 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 302
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 301 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 128
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 127 PKEYGEFLEERKKIVEEQKK 68
            +E   F +ER   +  QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180


>BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 166

 Score =  135 bits (326), Expect = 2e-31
 Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
 Frame = -2

Query: 481 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 302
           +R ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 15  ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 74

Query: 301 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 128
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 75  ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 134

Query: 127 PKEYGEFLEERKKIVEEQKK 68
            +E   F +ER   +  QK+
Sbjct: 135 SEELAAFQKERAIFLAAQKE 154


>AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 61

 Score = 63.3 bits (147), Expect = 9e-10
 Identities = 29/46 (63%), Positives = 35/46 (76%)
 Frame = -2

Query: 358 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQD 221
           I QP  SYFLK AAGI KGA +  +E +G +TLKH+YEIA+IK QD
Sbjct: 2   IGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQD 47


>BC015349-1|AAH15349.1|  260|Homo sapiens coiled-coil domain
           containing 127 protein.
          Length = 260

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -2

Query: 112 EFLEERKKIVEEQKKMLQEKREAKMLRTA*FSLL 11
           + +EE+K + +E+ +++QEKR+ + LR+A  S L
Sbjct: 112 KLVEEKKLLEQERAQVMQEKRQVQPLRSAYLSCL 145


>AK098567-1|BAC05336.1|  260|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25701 fis, clone TST04731. ).
          Length = 260

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -2

Query: 112 EFLEERKKIVEEQKKMLQEKREAKMLRTA*FSLL 11
           + +EE+K + +E+ +++QEKR+ + LR+A  S L
Sbjct: 112 KLVEEKKLLEQERAQVMQEKRQVQPLRSAYLSCL 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,037,765
Number of Sequences: 237096
Number of extensions: 2008634
Number of successful extensions: 5449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5449
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)