Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18g01
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-10|AAA27905.1| 195|Caenorhabditis elegans Hypothetical p... 169 1e-42
Z81509-2|CAB04155.1| 239|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z81077-11|CAB03068.2| 244|Caenorhabditis elegans Hypothetical p... 31 0.68
U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase ... 31 1.2
AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator prot... 31 1.2
U23484-1|AAC46766.2| 459|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm rec... 30 1.6
AL023856-7|CAA19563.2| 326|Caenorhabditis elegans Hypothetical ... 30 2.1
U80030-4|AAG24162.2| 370|Caenorhabditis elegans Serpentine rece... 29 3.6
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 4.8
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 28 8.4
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 28 8.4
>M77697-10|AAA27905.1| 195|Caenorhabditis elegans Hypothetical
protein B0303.15 protein.
Length = 195
Score = 169 bits (412), Expect = 1e-42
Identities = 92/195 (47%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = -2
Query: 610 SKSVARLKSMRKVAEKIDHSSKMRTNIXXXXXXXXXXXXXXXGQRNINIAAFCKDFNEKT 431
SK AR++ +K K+ H + +RTNI GQR +N+A FCK+FN++T
Sbjct: 3 SKGAARVR--KKEIVKVVHGALLRTNIKAQMASAAPPLGPQLGQRGLNVANFCKEFNKET 60
Query: 430 ANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHL 251
+ KQG+PLPTR+ V DR+Y L I P ++ LKQAAGI +G E GK+T+KHL
Sbjct: 61 GHFKQGVPLPTRITVKPDRTYDLEICTPTTTWLLKQAAGIGRGKASK-DEIVGKLTVKHL 119
Query: 250 YEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEI-VKELDPKEYGEFLEERKKIVEEQ 74
YEIAKIK +D L+ L++IC MLI T RT GI++ +LDP E EFL RK+ V+ Q
Sbjct: 120 YEIAKIKSRDKALQHVPLEQICRMLIKTCRTLGIDVQYHDLDPVELKEFLVARKEKVDAQ 179
Query: 73 KKMLQEKREAKMLRT 29
K L +K+ AKMLRT
Sbjct: 180 LKDLADKKAAKMLRT 194
>Z81509-2|CAB04155.1| 239|Caenorhabditis elegans Hypothetical
protein F21A3.4 protein.
Length = 239
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = -2
Query: 151 IEIVKELDPKEYGEFLEERKKIVEEQKKMLQE 56
+E++KE K GE +EE K++ +EQKKML+E
Sbjct: 176 VEMLKE-QRKSLGERVEEEKRMEQEQKKMLEE 206
>Z81077-11|CAB03068.2| 244|Caenorhabditis elegans Hypothetical
protein F36A2.11 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 142 VKELDPKEYGEFLEERKKIVEEQKKMLQEKREAKMLRT 29
+K+ + Y F+E+RKK E +KKM Q K + + +T
Sbjct: 140 MKKFHTESYEAFVEQRKKFDESRKKMDQAKADVRDAKT 177
>U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase
transcriptionalregulation mediator protein.
Length = 246
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 358 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAK 236
+HQ P Y L Q+ + GA+EP+R G++T Y AK
Sbjct: 111 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVTNYSRYNTAK 149
>AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator protein
6 protein.
Length = 250
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 358 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAK 236
+HQ P Y L Q+ + GA+EP+R G++T Y AK
Sbjct: 115 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVTNYSRYNTAK 153
>U23484-1|AAC46766.2| 459|Caenorhabditis elegans Hypothetical
protein EEED8.6 protein.
Length = 459
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 122 LGI*FFDYFNTTCSCSGYQHCTNFLQ 199
L + FF Y +T S +G QHCT +LQ
Sbjct: 375 LEVSFFSYRHTDSSGNGIQHCTPYLQ 400
>AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm
receptor protein 206 protein.
Length = 364
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 216 GGSCCFIFAISYKCFKVIFPLVSLTGSMAP 305
G S C IF +KC+K + L SL+ +P
Sbjct: 213 GSSLCTIFYFGWKCYKALSDLQSLSSGYSP 242
>AL023856-7|CAA19563.2| 326|Caenorhabditis elegans Hypothetical
protein Y94A7B.1 protein.
Length = 326
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 377 IRINFHSCW*--RYSLLNVSSLLIKIFTESGYIDIPLTQHRA 496
I + H+CW RYS L ++ +L +F + Y++IP Q A
Sbjct: 119 ILFSMHTCWRYIRYSFLTMNYVLTILFVITVYVEIPEDQEFA 160
>U80030-4|AAG24162.2| 370|Caenorhabditis elegans Serpentine
receptor, class w protein120 protein.
Length = 370
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +2
Query: 236 FCYFIQMLQSYFPTGFSNRFHGSFTYSSSLF*KI*SRWLMYYKMIRTIRINFHSCW*RYS 415
FC I FP G S F F Y S + SR L Y+ I ++ I ++C +
Sbjct: 274 FCVTITFFIVEFPYGLSLGFLWMFDYDSGI-----SRILSYFGFIFSVLITLNTCTHLFV 328
Query: 416 LLNVSS 433
L +SS
Sbjct: 329 CLIISS 334
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 362 KMIRTIRINFHSCW*RYSLLNVSSLLIKIFTESGYIDIPLT 484
+M R I FH W R S L V S+L+++ ++ +T
Sbjct: 566 EMARVYGIQFHEVWTRGSQLRVESMLLRLAHRMNFVAPSIT 606
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
protein C10C6.1 protein.
Length = 1565
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -2
Query: 241 AKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKELDPKEYGEFLEERKKIVEEQ 74
A++K LE+ S + + +L+ +R + E DP E+ LEE + +V EQ
Sbjct: 431 AQMKTSPESLEYLS-KLVKKLLMIVSRPARLLECLEFDPDEFYHLLEEAEGVVREQ 485
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 334 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTC 155
F++ A GI K +R+ G+ KH+Y IAKI+ +D + E ++
Sbjct: 228 FIRNADGIHK-----IRQVLGEKG-KHIYIIAKIESEDGVTNCDEIIEASDGVMVARGDL 281
Query: 154 GIEIVKE 134
GIEI E
Sbjct: 282 GIEIPAE 288
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -2
Query: 136 ELDPKEYGEFLEERKKIVEEQKKMLQEKREAK 41
E+D KE+ E+ +E++++ +++K +EK E K
Sbjct: 534 EVDKKEFDEWEKEQEELKKKEKAEKKEKEEKK 565
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -2
Query: 136 ELDPKEYGEFLEERKKIVEEQKKMLQEKREAK 41
E+D KE+ E+ +E++++ +++K +EK E K
Sbjct: 550 EVDKKEFDEWEKEQEELKKKEKAEKKEKEEKK 581
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -2
Query: 241 AKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKELDPKEYGEFLEERKKIVEEQ 74
A++K LE+ S + + +L+ +R + E DP E+ LEE + +V EQ
Sbjct: 431 AQMKTSPESLEYLS-KLVKKLLMIVSRPARLLECLEFDPDEFYHLLEEAEGVVREQ 485
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,887
Number of Sequences: 27780
Number of extensions: 338533
Number of successful extensions: 1142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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