Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18g01
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.44 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 27  AVLNILASRFSCNIFFCSSTIFFLSSRNSPYSLGSNSLTIS 149
           A+L+   S   C++   SST    SSRNS  S GS S++ S
Sbjct: 165 ALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSES 205


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 174  INIVQISCSDFHSKGGSCCFIFAISYKCFKVIFPLV--SLTGSMAPLLIPAACFKKYEAG 347
            +N+ +  CSD+ S+GG    I    Y       PLV  +L+G +  L+I    F   E+ 
Sbjct: 969  LNVNETVCSDYFSQGGVIESIMVSDY------LPLVAATLSGVLVLLVIIVLAFVFRESV 1022

Query: 348  G 350
            G
Sbjct: 1023 G 1023


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 124 KEYGEFLEERKKIVEEQKKMLQEKREAK 41
           +EY +   + +K+  E++K L+EK   K
Sbjct: 10  REYRKKDRQYEKLYNEKEKFLEEKTSRK 37


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 124 KEYGEFLEERKKIVEEQKKMLQEKREAK 41
           +EY +   + +K+  E++K L+EK   K
Sbjct: 10  REYRKKDRQYEKLYNEKEKFLEEKTSRK 37


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 124 KEYGEFLEERKKIVEEQKKMLQEKREAK 41
           +EY +   + +K+  E++K L+EK   K
Sbjct: 10  REYRKKDRQYEKLYNEKEKFLEEKTSRK 37


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 124 KEYGEFLEERKKIVEEQKKMLQEKREAK 41
           +EY +   + +K+  E++K L+EK   K
Sbjct: 10  REYRKKDRQYEKLYNEKEKFLEEKTSRK 37


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 22/96 (22%), Positives = 37/96 (38%)
 Frame = -2

Query: 319 AGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIV 140
           +GI+   +  +   SG   LK     AK  +    L WK L  +   ++       ++ V
Sbjct: 354 SGIASAKVRSMFNDSGNPILK-----AKPSEVVQILGWKELPNVGDEILEVENDKILQEV 408

Query: 139 KELDPKEYGEFLEERKKIVEEQKKMLQEKREAKMLR 32
            +   K+  E L +  K   +QK         KML+
Sbjct: 409 IKFRQKQRAEILAKEHKAAADQKLEKHLIEYKKMLK 444


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 256 HLYEIAKIKQQDPPL 212
           HL+E A I   +PPL
Sbjct: 234 HLFESANISLDEPPL 248


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 124 KEYGEFLEERKKIVEEQKKMLQEKREAK 41
           +EY +     +K+  E+KK+L+E+   K
Sbjct: 243 REYKKKDRRYEKLHNEKKKLLEERTSRK 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,982
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)