Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f23
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       29   0.77 
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   9.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   9.4  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.4  

>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 55  LLNSNIMHNLSIYFIHPFLLFKMLLQQHNFSCIYRFFSIK-YNIITC 192
           LL++ I H++  +F+ PF  F +++ +  FS   ++  +  Y  I C
Sbjct: 2   LLSNKIKHSIFQFFVFPFYYFLLIITEIGFSSCIQYSGLSAYFPIKC 48


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 55  LLNSN-IMHNLSIYFIHPFLLFKMLLQQHNFSCIYRFFSIKYNIITCLYYIVLVF 216
           ++NS   MH+  I F++ F LF+  L+   F   +  +  K ++ +   YI+ +F
Sbjct: 253 IINSQWFMHSSIILFLNKFDLFRKKLEHVPFQDYFPQYEGKNSVKSITRYILWLF 307


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 461  YIIAFVLYQRHNKVFSS*EHINLCTSICNYYL 556
            Y+  +V+Y  H  V +S E++N+ TS+  Y+L
Sbjct: 1071 YLPDYVIY--HELVLTSKEYMNIVTSVDPYWL 1100


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 693 LSHLIFCDSLHSV*KLCNINCNVNKKFTTVFRTKLYGVFYC 571
           LS    C  L++V ++   N  V   F TV+R++ YG+  C
Sbjct: 449 LSRNFKCIDLNNVPEIIK-NAKVESSFGTVYRSERYGLRGC 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,050
Number of Sequences: 5004
Number of extensions: 62864
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)