Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f23
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0480 + 18567759-18567956,18568140-18569226,18570025-18570380     29   3.2  
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    29   5.6  

>07_03_0480 + 18567759-18567956,18568140-18569226,18570025-18570380
          Length = 546

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 461 IGNKKIIKIDRC*EEDCNSYLANTELPCYSLHT 363
           I +KK IK+  C   DC S++ + + PC ++ T
Sbjct: 468 IADKKGIKLRFCSLRDCESHIKSLDRPCENIRT 500


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -1

Query: 311 SLNNIFSSNMRIIDVHSKLTLHVLRNV*NLPEKTKTM*YKQVIILYLIEKN 159
           S+N +  S MR+ D+ SKL   VL NV    E+     Y QV+++   E+N
Sbjct: 52  SMNQVADSQMRLYDLPSKLLCRVL-NVELKAEQDTDEVYAQVMLMPEPEQN 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,682
Number of Sequences: 37544
Number of extensions: 297308
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)