Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f23
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    32   0.41 
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine rece...    28   6.7  
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    28   8.9  

>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +1

Query: 73  MHNLSIYFIHPFLLFKMLLQQHNFSCIYRFFSIKYNIITCLYYIVLVFSGRFQTF 237
           M+N+ ++ I  FLLF  LL+    +C Y    I+YNII    +I+L F+    T+
Sbjct: 10  MNNIFLFEIMRFLLFLQLLKMQKSNC-YSTKLIRYNIIV---FIILFFAYNCLTY 60


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 545 NYYLNNLVIQ*NTPYNLVLKTVVNF 619
           NYY+NN+V Q + P ++  KTVV F
Sbjct: 177 NYYVNNVVSQKSYPISMENKTVVYF 201


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 452 YSLYIIAFVLYQRHNKVFSS*EHINLCTSICNYYLNNLVIQ*NTPYNLVLKTVVNFLFTL 631
           Y   +IAF   ++ NK+ S+     +  + C   +N L+IQ   P+ + +     FL++ 
Sbjct: 201 YMSPLIAFHYRRKINKILSTNTGQRIPVAYCKQLINGLLIQTLIPFCVYIPPYSYFLYS- 259

Query: 632 QLILH-NFYTECKLS 673
           QL  H N Y E  L+
Sbjct: 260 QLSGHSNLYFEYLLN 274


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 52  QLLNSNIMHNLSIYFIHPFLLFKMLLQQHNFSCIYRFFSIKYNIITCLYYIVLVFSGRFQ 231
           +LLNS  +  + ++   P L F  +L    FS +++FF I   I    Y ++ +F  RF+
Sbjct: 59  ELLNSWFLIPV-VHVNLPILRFTGILSHWGFSGLFQFFVIGTMIYLTAYSVLEMFMFRFR 117

Query: 232 TFL 240
             L
Sbjct: 118 ASL 120


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 52  QLLNSNIMHNLSIYFIHPFLLFKMLLQQHNFSCIYRFFSIKYNIITCLYYIVLVFSGRFQ 231
           +LLNS  +  + ++   P L F  +L    FS +++FF I   I    Y ++ +F  RF+
Sbjct: 59  ELLNSWFLIPV-VHVNLPILRFTGILSHWGFSGLFQFFVIGTMIYLTAYSVLEMFMFRFR 117

Query: 232 TFL 240
             L
Sbjct: 118 ASL 120


>U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 33 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 145 SCIYRFFSIKYNIITCLYYIVLVFSGRFQTFL 240
           S IYR+FSI++   T    I+L   G F  FL
Sbjct: 129 SMIYRYFSIRFKRFTANTSIILCIIGYFFPFL 160


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 34  IFFAVLQLLNSNIMHNLSIYFIHPFLLF 117
           IFF +   L +N + NL++  +H FLLF
Sbjct: 35  IFFVISGFLMANNLTNLNLLNVHDFLLF 62


>AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical
           protein Y46H3D.4 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 198 LHCFGFFRKVSNIS*NMQS*F*MNIYDSHI*TKY 299
           LH F FF K+ NI  N  +   +NI++S+  T++
Sbjct: 232 LHDFSFFEKLENIKSNKYANVDINIFESYNLTRF 265


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 58  LNSNIMHNLSIYFIHPFLLFKMLLQQHNFSCIYRFFS-IKYNIITCLYYIVLVFSGRFQ 231
           L+S I+  LS++ +   + F+ L   H+ +    FFS I +   + +Y + + F  +FQ
Sbjct: 223 LSSVILTILSVFIVGLSIYFRRLEMLHSLTETAMFFSCISFCATSVIYIVSISFKDQFQ 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,908
Number of Sequences: 27780
Number of extensions: 351911
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)