Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f21
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 0.27
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 0.62
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 0.62
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 1.4
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 1.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 1.9
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 3.3
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 3.3
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 4.4
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 4.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 5.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 24 5.8
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 23 7.7
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 23 7.7
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 23 7.7
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 23 7.7
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 0.27
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 32 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 160
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 0.62
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 187 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 92
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 0.62
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -1
Query: 286 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 107
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 106 LSASIQASLPSSEIYRQL 53
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 21 KESEETWRESTNWR*ISEEG 80
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 1.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 262 LVTHKELALKVSSIIGTRVYVFDPSCY 182
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 1.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 47 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 148
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 3.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 196 DPSCYFSTPPFDTVLYDNIRT 134
DP+ Y PFDTV D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 3.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 122 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 39
Q+ C+ LC YS SP R+LP F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 24.2 bits (50), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 139 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSD 26
R +LKD LS S+ SLPS Q + H S+
Sbjct: 57 RKILKDVSLKRLSKSLDRSLPSENTIDQ-ISFNHAMSE 93
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 252 IRNWPSRFLLS*APESTSSIPPATFQ 175
IR W S+F+ S A + + P T Q
Sbjct: 128 IREWSSKFMNSKASQKQQMLSPETMQ 153
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 23.8 bits (49), Expect = 5.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 240 PSRFLLS*APESTS-SIPPATFQLLPSIPYCTTTS 139
P+ L+ STS S PP T L+ ++P TTT+
Sbjct: 172 PATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTT 206
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 160 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 50
TVL + I+ V+K + A+ +LP +Y QL+
Sbjct: 360 TVLSNGIKKVIKTITASSRHANYAKALPRCSVYLQLL 396
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 7.7
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -1
Query: 202 VFDPSCYFSTPPF 164
+FDP C ++ PP+
Sbjct: 260 IFDPDCAYAFPPY 272
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 64 YRQLVDSRHVSSDSF 20
YRQLVD R ++ D F
Sbjct: 34 YRQLVDGRELTLDDF 48
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 196 DPSCYFSTPPFDTVL 152
D CYF TPP T L
Sbjct: 579 DLECYFRTPPKPTTL 593
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 85 SLPSSEIYRQLVDSRHVSSDSFGV 14
+L S I+R + S HVSS S GV
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGV 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,125,289
Number of Sequences: 5004
Number of extensions: 18550
Number of successful extensions: 73
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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