Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f21
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   2.0  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   2.6  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   2.6  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 202 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 29
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFS 292


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 57  WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 164
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 57  WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 164
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
          protein T07F8.1 protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 16 LQRSRKKHGENLPTGGRSRRKGEKLE 93
          + + RK+HG+NL   G + +K ++LE
Sbjct: 2  VSKKRKEHGKNLGVLGPAAKKQKRLE 27


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 13  RLQRSRKKHGENLPTGGRSRRKGE 84
           R    RKKHG ++   GR RR G+
Sbjct: 103 RENMDRKKHGTHVDHHGRVRRNGD 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,222,186
Number of Sequences: 27780
Number of extensions: 106111
Number of successful extensions: 344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)