Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f21
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 213 PESTSSIPPATFQLLPSIPYCTTTSGRF 130
           P+S  S   A   L+PS P C      F
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCAEAFQEF 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 200  DVDSGAYDRRNLEGQFL 250
            DV  G YD     G FL
Sbjct: 1268 DVSEGIYDGSGANGSFL 1284


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 5/27 (18%), Positives = 16/27 (59%)
 Frame = -1

Query: 298 IIDYKVKIADNNLVTHKELALKVSSII 218
           ++D+ + +AD N +  +++  +V   +
Sbjct: 12  LVDFNIFVADINSINVEDMDFRVDMFV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,355
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)