Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f18
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    29   3.0  
04_04_1661 + 35146662-35147288                                         28   5.2  
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...    28   5.2  
09_04_0521 - 18297343-18297840                                         27   9.0  
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557...    27   9.0  

>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 358 EYIGGNDSNLIPNPGDSLCDN 296
           EY+  ND NL P  GD +C N
Sbjct: 250 EYVHRNDPNLSPREGDWICQN 270


>04_04_1661 + 35146662-35147288
          Length = 208

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -1

Query: 349 GGNDSNLIPNPGDSLCDNSLVYSIPVVIPYRSNQFVMYVR 230
           GG +   +P+P  +   +++ +S+  V+P  +  F++  R
Sbjct: 110 GGEEEKALPSPAQAAAASAMAFSVGAVVPLLAAGFIVNYR 149


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -1

Query: 511 KPDTLYLNLYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPITWNEL-EYIGGNDS 335
           K D +YL L   +YR  V    +  +      +F++K+N   R P++   L  ++ G ++
Sbjct: 20  KSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTN---RPPLSLRRLVRFMEGKEN 76

Query: 334 NLIPNPGDSLCDNSLVYSIPVV 269
            +    G ++ D+  VY +P +
Sbjct: 77  QIAVIVG-TVTDDKRVYEVPAM 97


>09_04_0521 - 18297343-18297840
          Length = 165

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 283 NRLDCCHTMNRPDLELNLNRYH-LCILIRSKLL-DCDDP 393
           NRL C H  +R  LE  L+  H  C L RS+LL D   P
Sbjct: 117 NRLPCGHIFHRACLETWLDYDHATCPLCRSRLLADSSSP 155


>06_03_0175 +
           17553447-17553667,17555313-17555467,17555625-17555713,
           17556253-17556376,17556920-17556989,17557345-17557441,
           17559365-17559427,17559504-17559581,17559675-17559737
          Length = 319

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 532 DEPLNNWKPDTLYL 491
           DE + +WKP+TLYL
Sbjct: 197 DEKIQDWKPETLYL 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,418
Number of Sequences: 37544
Number of extensions: 375439
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)