Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f18
         (619 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60234-1|AAA35910.1|  830|Homo sapiens granule membrane protein-...    30   5.7  
M25322-1|AAA35911.1|  830|Homo sapiens protein ( Human granule m...    30   5.7  

>M60234-1|AAA35910.1|  830|Homo sapiens granule membrane protein-140
           protein.
          Length = 830

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   APIPXFLTPMTSNLICVHANKIFRHYDQC 90
           A  P    P   N+IC+H+ K F+H   C
Sbjct: 260 AQCPPLKIPERGNMICLHSAKAFQHQSSC 288


>M25322-1|AAA35911.1|  830|Homo sapiens protein ( Human granule
           membrane protein-140 mRNA, complete cds. ).
          Length = 830

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   APIPXFLTPMTSNLICVHANKIFRHYDQC 90
           A  P    P   N+IC+H+ K F+H   C
Sbjct: 260 AQCPPLKIPERGNMICLHSAKAFQHQSSC 288


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,032,340
Number of Sequences: 237096
Number of extensions: 2114725
Number of successful extensions: 4417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4417
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)