Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f18
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 31 0.87
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 31 0.87
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 31 0.87
Z68221-6|CAB97237.1| 583|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z68217-12|CAA92468.2| 583|Caenorhabditis elegans Hypothetical p... 28 4.6
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 4.6
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 28 6.1
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 27 8.1
Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical pr... 27 8.1
U49829-6|AAA93387.1| 498|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 160 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 255
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 160 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 255
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 160 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 255
RL FQ P RNY I + LCAA H + DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323
>Z68221-6|CAB97237.1| 583|Caenorhabditis elegans Hypothetical
protein F58G6.6 protein.
Length = 583
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 166 LDDECRYAQMAKVVRSQLQKHKLDARID 83
L +EC Y Q VR + K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543
>Z68217-12|CAA92468.2| 583|Caenorhabditis elegans Hypothetical
protein F58G6.6 protein.
Length = 583
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 166 LDDECRYAQMAKVVRSQLQKHKLDARID 83
L +EC Y Q VR + K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 4.6
Identities = 25/100 (25%), Positives = 39/100 (39%)
Frame = -1
Query: 553 FGDKSGMDEPLNNWKPDTLYLNLYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPI 374
+G + G ++P P T + PV ++ PT + P+ T +N NP
Sbjct: 446 YGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPT 505
Query: 373 TWNELEYIGGNDSNLIPNPGDSLCDNSLVYSIPVVIPYRS 254
T +N I +P S S+V S P + P S
Sbjct: 506 TATPTTVGTSKQTNTI-SPHLSTITGSIVTSTPTMAPQTS 544
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 451 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 576
K+EH KP + + + +S + R Y +T++C R N
Sbjct: 16 KSEHFVRKPYESEAGRHVITNSFCSICEVRTYRETKHCKRCN 57
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 211 VGEGFY-NCADLVFETLDDECRYAQMA--KVVRSQLQKHKLDARIDHNDEKSCWRAH 50
+ + FY N D++ + + A + V S+ Q H+++ ++ DE+SC AH
Sbjct: 253 ISDSFYLNNFDVISSAANSQIFEASICGESDVASKFQLHRIEEESENGDEQSCAGAH 309
>Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical
protein ZK673.11a protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 211 VGEGFY-NCADLVFETLDDECRYAQMA--KVVRSQLQKHKLDARIDHNDEKSCWRAH 50
+ + FY N D++ + + A + V S+ Q H+++ ++ DE+SC AH
Sbjct: 262 ISDSFYLNNFDVISSAANSQIFEASICGESDVASKFQLHRIEEESENGDEQSCAGAH 318
>U49829-6|AAA93387.1| 498|Caenorhabditis elegans Hypothetical
protein F27D9.2 protein.
Length = 498
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -2
Query: 438 YTSPAILKCLLLNQTGIVAIQ 376
YTSPA+ CL+LN TG++ ++
Sbjct: 212 YTSPALF-CLILNVTGLLIVK 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,109
Number of Sequences: 27780
Number of extensions: 348027
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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