Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f18
(619 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 29 0.048
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 29 0.048
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.59
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.59
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.59
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.59
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.59
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.59
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.59
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.59
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.4
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 23 3.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 4.2
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.5
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 5.5
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 7.3
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 9.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 9.6
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 9.6
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 28.7 bits (61), Expect = 0.048
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 379 PITWNELEYIGGNDSNLIPNPGD 311
PI+ E ++GGN N++P GD
Sbjct: 1855 PISVAETTFVGGNQGNVVPGNGD 1877
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 28.7 bits (61), Expect = 0.048
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 379 PITWNELEYIGGNDSNLIPNPGD 311
PI+ E ++GGN N++P GD
Sbjct: 1851 PISVAETTFVGGNQGNVVPGNGD 1873
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 40 KLEWVDYN-LQWNESEYGGVKDLRITPN 66
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 108 KLEWVDYN-LQWNESEYGGVKDLRITPN 134
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.59
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 403 KSNWDRRNPITWNELEYIGGNDSNLIPN 320
K W N + WNE EY G D + PN
Sbjct: 108 KLEWVDYN-LQWNESEYGGVKDLRITPN 134
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.8 bits (49), Expect = 1.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 424 YFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGD--SLCD 299
Y + + + D+R P +EL YI + L P PG + CD
Sbjct: 1622 YQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCD 1665
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 22.6 bits (46), Expect = 3.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -1
Query: 139 MAKVVRSQLQKHKLDARIDHNDEKSCWRAHKSNC 38
M V + K +R HN+ + RAH NC
Sbjct: 34 MRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNC 67
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = -1
Query: 526 PLNN-WKPDTLYLNLYQPVY 470
P N W+PDT+ N P Y
Sbjct: 83 PYNRVWRPDTILYNNADPQY 102
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +3
Query: 519 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 611
+KG ++ ++S T+ + + P P ++ G C
Sbjct: 92 YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +3
Query: 519 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 611
+KG ++ ++S T+ + + P P ++ G C
Sbjct: 92 YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.4 bits (43), Expect = 7.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -1
Query: 433 EPSYFEVFITKSNWDRR 383
EP Y+ + + K NW ++
Sbjct: 209 EPIYYNLTMVKLNWPKK 225
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1
Query: 520 NNWKPDTLYLNLYQPVYRM 464
N W PDT ++N Q + +
Sbjct: 92 NIWVPDTFFVNEKQSYFHI 110
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1
Query: 520 NNWKPDTLYLNLYQPVYRM 464
N W PDT ++N Q + +
Sbjct: 92 NIWVPDTFFVNEKQSYFHI 110
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1
Query: 520 NNWKPDTLYLNLYQPVYRM 464
N W PDT ++N Q + +
Sbjct: 31 NIWVPDTFFVNEKQSYFHI 49
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,229
Number of Sequences: 438
Number of extensions: 4309
Number of successful extensions: 25
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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