Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f16
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    32   0.068
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    29   0.64 
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   0.84 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   3.4  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 5   FFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSQMSALHNQLQ 184
           FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + L N ++
Sbjct: 52  FFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTDLRNSIK 111

Query: 185 NHMILHLIA 211
            H  L  +A
Sbjct: 112 QHQQLKELA 120


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 108 NNNVNY*VQHTNLTSHKCQRYIISFKIT*FYI**HNVYRSQKYTT*LCQTHS 263
           NN+ NY V       H+C++++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 366 NCSELHIKRSV*CLLSILNLSFVGIENFHFFLHSGS 259
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 179 LQNHMILHLIA*CVQKSKIHYIIMSNSL--PLCKKKWKFSIPTKLKFKIDNRH 331
           + + + L+ I+   +   +H +++   +  P  K+ W+F+    L F ++N H
Sbjct: 20  IDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,117
Number of Sequences: 5004
Number of extensions: 52424
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)