Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f14
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    33   0.032
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.7  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   2.7  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   3.6  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   4.8  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   4.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.4  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   8.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   8.4  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
 Frame = -1

Query: 626 PAEAHRDSGEEPASGQRCCRSGES-PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 450
           P   H + GE           GE  PP P+             H +  +    P   +  
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333

Query: 449 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 348
           GE     P +H EL  H    H    E+   HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = -2

Query: 691 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 512
           EDV  E+ +    +  E  D  + ++ E + +N  P+       +     + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307

Query: 511 QM 506
            +
Sbjct: 308 NL 309


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 467 DRSYRSGEGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 348
           D S R   G  +IP+RHR+ R         + G  RE+P  H G
Sbjct: 2   DLSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 356 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 216
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 49  AKFGYYTLIICIRSVYGVHSLFIGVRRDLSLGFE*NPGLLYVAIAQAVLPLYKNKNKTCN 228
           ++ G Y  I  I  VYG+H L+ G    L   F    G+ +VA  Q    L ++     +
Sbjct: 58  SRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFP-YAGIKFVAYEQVRRVLIRDPEHETH 116

Query: 229 GRR 237
            RR
Sbjct: 117 ARR 119


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -2

Query: 724 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 545
           D  EK V  S +    E+ QK++ D  E+ D   +  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 544 LLDGVEHFDKT 512
            ++GV++  KT
Sbjct: 188 AVEGVQNSKKT 198


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -2

Query: 709 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 581
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 179 MATYSNPGFYSNPNDKSRLTPINSEWTP 96
           +++YS+P     P+  S  +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 506 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 411
           ++HD G   S + DR     + K++   +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 479 ILFFRRRVLHLSLVEVFNSVQEVL 550
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 703 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 608
           LP +ED+   +   SL D   + D+SQL   E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 667 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 581
           Q +   G +  DSS +K T  +E  PLP+
Sbjct: 3   QTAALHGPKPMDSSHIKVTNVKELKPLPE 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,630
Number of Sequences: 5004
Number of extensions: 55848
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)