Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f14
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0057 + 22410167-22411330 33 0.31
10_01_0090 + 1110035-1110350,1111032-1111039 31 0.94
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 31 1.2
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 30 1.6
06_02_0203 + 12986685-12988691 30 1.6
03_02_1016 + 13228113-13228964 30 1.6
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 2.9
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 2.9
01_06_0241 - 27813076-27813622,27813695-27814125 29 2.9
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 3.8
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 3.8
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 3.8
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 3.8
06_03_0165 - 17399535-17400178,17400378-17400522 29 5.0
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 5.0
09_04_0276 - 16306894-16307526,16307556-16308572 28 6.6
02_03_0131 - 15576422-15577021 28 6.6
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 28 8.7
>04_04_0057 + 22410167-22411330
Length = 387
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/70 (25%), Positives = 26/70 (37%)
Frame = -1
Query: 626 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 447
P A + P RC S PP P + + D++ +D RKE RS
Sbjct: 187 PPPAAAAASPSPERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSE 246
Query: 446 EGKEQIPERH 417
++P H
Sbjct: 247 RRAARLPRSH 256
>10_01_0090 + 1110035-1110350,1111032-1111039
Length = 107
Score = 31.1 bits (67), Expect = 0.94
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = -1
Query: 545 PLGRS*TLRQDSDEAHDDG----RKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGN 378
PL R + D D A +DG R+ A R R EG+ RHR + + G+
Sbjct: 8 PLDRVSDVASDHDGADEDGLAAQRRRRVADGRRLRRREGRHGHLLRHRHQQVRHRDPTGD 67
Query: 377 VREEPAPHKGRH*ARE 330
E +P R ARE
Sbjct: 68 GHESSSPAAARTAARE 83
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Frame = -1
Query: 629 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGR----S*TLRQDSDEAHDDGRKESTAPDR 462
E R G G+R ESPP P + S +DS E D +E+ P
Sbjct: 60 EEESRSRRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSS 119
Query: 461 SYRSGE---GKEQIPERHRELRS 402
R G G E PE + R+
Sbjct: 120 RKRKGHEGGGNESDPEGGKRARA 142
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = -1
Query: 464 RSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCI 285
R+Y S + +P REL + A A+ ++R+E A H + +++ R I
Sbjct: 496 RAYIS-TARRVVPSVPRELEEYIATAYSSIRQEEAKSNAPH---SYTTIRTLLSILRISI 551
Query: 284 SLVSPYFNIDVSQIDLRRPLQVLFLFLYN 198
+L F+ V+Q D+ L+++ + Y+
Sbjct: 552 ALARLRFSETVAQSDVDEALRLMQMSKYS 580
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 592 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 491
P+P+ + +AA++AH N G EH K + TTT
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>03_02_1016 + 13228113-13228964
Length = 283
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -1
Query: 629 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHD 495
E A AH +G + A+ +R C SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAARR-CSSGNHQPVPRARSTTGMDSLGHGHD 257
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/92 (30%), Positives = 38/92 (41%)
Frame = -1
Query: 626 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 447
P E ++DS + S + ESP S + S +HDD R+ T PD S R+G
Sbjct: 1312 PGEPYQDSNKTDPSTP--VPTSESPIRDKAGSGLFKTIS--SHDDCREPLT-PDSSCRAG 1366
Query: 446 EGKEQIPERHRELRSH*AEAHGNVREEPAPHK 351
E P + +R H E P P K
Sbjct: 1367 SPLESPPRASKRIRVSSDIDHRGNNEFPPPLK 1398
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -2
Query: 640 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 482
K+D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 521 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 351
R + + H+ ++S +RS+R+ ++ + HR RS H A + V + H+
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 535 RPRGSGGLSPLRQHLCPEAGSSPESRCASAG 627
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 712 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 593
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -1
Query: 620 EAHRDSGEEPASGQ--RCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 447
E+ +SG+EP + SG + P P + D + DD ES+ D +
Sbjct: 328 ESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQT 387
Query: 446 EGKE-QIPERHRELRSH*AEAHGNVREEPAPHK 351
+ K+ Q P S + + E P K
Sbjct: 388 QAKKVQAPVAQESSSSDESSEEDSDMESDEPAK 420
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 724 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQ-EKNPLPDKDVVAAEKAHQ 548
D EK + +DVA + K GIE D S K T + E N L D + ++
Sbjct: 927 DILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNE 986
Query: 547 NLLDGVEHFDKTQMKHTTTEEKNPL 473
NL + + K++ + ++ N L
Sbjct: 987 NLNERLSKIKKSEARPEEVQDANAL 1011
>06_03_0165 - 17399535-17400178,17400378-17400522
Length = 262
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 203 YNGNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 96
++G W T G YS D +RLT I SE P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/89 (23%), Positives = 34/89 (38%)
Frame = -1
Query: 554 PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNV 375
PP P GR RQ + DG+ + D S RS +G P++ S A V
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDKMWHCMSLGYSAKSKV 148
Query: 374 REEPAPHKGRH*AREISLNHYFITVTRKC 288
++ + + L + ++R C
Sbjct: 149 KDTIGQYGNGFKTSTMRLGADVLVLSRSC 177
>09_04_0276 - 16306894-16307526,16307556-16308572
Length = 549
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 66 YTNYLY*IGLWRPLAVYWRKAR 131
+T Y Y LW P YWR+AR
Sbjct: 111 HTTYNYTDILWSPYGAYWRQAR 132
>02_03_0131 - 15576422-15577021
Length = 199
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Frame = -1
Query: 521 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNV---REEPAPHK 351
R D D R DR R GE + RSH +H + R P+P
Sbjct: 34 RDHRDRDRDKERDRDRDRDRERRRGERDRKRSRSPSADRSHRRHSHSHSHRGRSSPSPDA 93
Query: 350 GRH 342
GRH
Sbjct: 94 GRH 96
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Frame = -1
Query: 524 LRQDSDEAHDDGRKESTAPDRSYR----SGEGKEQIPERHRELRSH*AEAHGNVREEPAP 357
L+QD D + A R GE +P ++ E E H +
Sbjct: 1723 LQQDEDRIQSTNASSTLAAGEDVRRFSEQGEHARSVPSKNLEECEPSLENHSTGKTSIED 1782
Query: 356 HKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 240
H + LNH+ + R +SP +D++ ID
Sbjct: 1783 ISMEHRKLAVDLNHFHQELERLKNENLSPLLPLDINLID 1821
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,392,959
Number of Sequences: 37544
Number of extensions: 379180
Number of successful extensions: 1175
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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