Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f14
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    75   7e-14
Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    30   1.5  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   5.9  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 46/117 (39%), Positives = 58/117 (49%)
 Frame = -2

Query: 727 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQ 548
           V+T EK VLP+ EDVA EK        IE FDS++L  T  +EK  LP  D +  EK H 
Sbjct: 27  VETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHL 86

Query: 547 NLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXKNKFLNGIENFDPTKLKHTET 377
            L D + +F    +K T T EKN L           + K L    +FD + L H ET
Sbjct: 87  ELTDKINNFPSENLKKTETIEKNVL----PSPTDVAREKTLQMAASFDKSALHHVET 139



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 39/100 (39%), Positives = 52/100 (52%)
 Frame = -2

Query: 625 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 446
           +LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  L         
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 445 XXKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 326
               +  + I NF    LK TET EKN LP+   + +EK+
Sbjct: 83  KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical
           protein F54B8.3 protein.
          Length = 309

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
 Frame = +2

Query: 380 FRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQE 544
           F V+ L+ ++V  A++    F    ++ DR Q I +F+R       LH+  VE++NS  +
Sbjct: 99  FLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYVD 156

Query: 545 VLVGFLRC 568
            ++  LRC
Sbjct: 157 DVMTILRC 164


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 228 ITSFIFVFVQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRVDAINRSNTDN 73
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = -2

Query: 697 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFD 518
           S       K  + L   +E   S    H + ++KN   D ++   E   Q  L+G   F+
Sbjct: 367 SCNSTIEHKEAEELISHLELESSQNSIHNDNRKKNEDYDMEISEIETITQRQLEGYGTFN 426

Query: 517 KTQMKH 500
             +MK+
Sbjct: 427 SPEMKN 432


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/96 (21%), Positives = 40/96 (41%)
 Frame = -1

Query: 629 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 450
           +P E  +D  ++   G++  R  +   E   +S   ++    +++D RK+    +R  R 
Sbjct: 141 DPTEV-KDRFDKEREGRKQQRGDDGEEEDHPKS---QRGIQRSNEDDRKDEEEEERPRRP 196

Query: 449 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH 342
            + +    E   E R      HG   EEP+  +  H
Sbjct: 197 HQRRGDSYEDEEEDRKKYRPRHGEEEEEPSREREHH 232



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -1

Query: 497 DDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLN 318
           +DGR++    +   R   GK ++PE+  E   H  ++HG+    P  ++G    +E    
Sbjct: 502 EDGREKDDFREDHGREDHGKSEVPEK-VEHEQHPPQSHGSPHPGP-QYQGPPPRKEFPTP 559

Query: 317 HYFITVTR 294
             F+T  R
Sbjct: 560 GRFVTNIR 567


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 620  EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 480
            E   +  E+    +   R  E  PEPL R      D DE  DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,235
Number of Sequences: 27780
Number of extensions: 324892
Number of successful extensions: 1059
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)