Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f08
         (383 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   0.46 
UniRef50_Q4S5M5 Cluster: Chromosome 9 SCAF14729, whole genome sh...    33   1.9  
UniRef50_Q4R7K9 Cluster: Testis cDNA, clone: QtsA-14980, similar...    33   2.5  
UniRef50_Q7EYD8 Cluster: Putative uncharacterized protein P0665F...    32   3.3  
UniRef50_Q9DHA5 Cluster: R-LORF3 protein; n=1; Gallid herpesviru...    32   4.3  
UniRef50_O82022 Cluster: ENBP1 protein; n=3; Papilionoideae|Rep:...    32   4.3  
UniRef50_Q89ZX0 Cluster: Putative uncharacterized protein; n=2; ...    31   7.5  
UniRef50_Q7TW64 Cluster: POSSIBLE OXIDOREDUCTASE; n=23; Actinomy...    31   7.5  
UniRef50_Q01TS6 Cluster: Transposase IS66; n=1; Solibacter usita...    31   9.9  
UniRef50_Q6Z4I5 Cluster: DNA binding protein-like; n=4; Oryza sa...    31   9.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 0.46
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 144 WYLPVRTHKRSYHQ 185
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q4S5M5 Cluster: Chromosome 9 SCAF14729, whole genome
           shotgun sequence; n=10; Euteleostomi|Rep: Chromosome 9
           SCAF14729, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 637

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 169 LCVRTGRYHRPAYFCREAVM-RFGLKGGAAVVTILRP*NYISRCVAHLSCRC 17
           L V    +H+P+Y     +    GL  GA+++TIL   +Y+   + H  CRC
Sbjct: 561 LSVLNDVFHKPSYLISGDIGGHMGLFIGASILTILEIFDYLYEVIKHKLCRC 612


>UniRef50_Q4R7K9 Cluster: Testis cDNA, clone: QtsA-14980, similar to
           human mitochondrial ribosomal protein S31 (MRPS31),
           nucleargene encoding mitochondrial protein,; n=6;
           Eutheria|Rep: Testis cDNA, clone: QtsA-14980, similar to
           human mitochondrial ribosomal protein S31 (MRPS31),
           nucleargene encoding mitochondrial protein, - Macaca
           fascicularis (Crab eating macaque) (Cynomolgus monkey)
          Length = 344

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 354 VRCIRIERCTGVRISLAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIIICVITGGR 175
           VR   I+RC G    +        +RT +  T     E   S  +N T+K ++ +I G +
Sbjct: 41  VRMKNIQRCFGTNSVICSKKDEQSVRTDE--TSKETSESQASAKEN-TKKDLLDIIKGMK 97

Query: 174 TSCASARVGTTAPP 133
              ++  V TT PP
Sbjct: 98  VELSTVNVQTTKPP 111


>UniRef50_Q7EYD8 Cluster: Putative uncharacterized protein
           P0665F09.120-1; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0665F09.120-1 - Oryza sativa subsp. japonica (Rice)
          Length = 496

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -3

Query: 339 IERCTGVRISLAGTNFSNEIRTQQMFTIDFHGE 241
           I RCTGV I   G N   +I T      DFHGE
Sbjct: 203 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 235


>UniRef50_Q9DHA5 Cluster: R-LORF3 protein; n=1; Gallid herpesvirus
           3|Rep: R-LORF3 protein - Gallid herpesvirus 3 (Marek's
           disease virus type 2)
          Length = 116

 Score = 31.9 bits (69), Expect = 4.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 149 PTRADAQEVLPPVITQIIILRV*FLLHDVIPSPWKSIVNIC*VRISLEKLVPASEIR-TP 325
           PTR D      P+  Q I +R      D+ PSP    ++   ++++L   +P + +R + 
Sbjct: 4   PTRTDTYS---PLTIQHIAVR----FTDIPPSPPNRTLHSGSLKVALRSHIPPTPLRWSG 56

Query: 326 VHRSMRMHRTSYH 364
           V R +  HRT YH
Sbjct: 57  VRRPLTQHRTPYH 69


>UniRef50_O82022 Cluster: ENBP1 protein; n=3; Papilionoideae|Rep:
           ENBP1 protein - Medicago truncatula (Barrel medic)
          Length = 1701

 Score = 31.9 bits (69), Expect = 4.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 225 NKNQTRKIIICVITGGRTSCASARVGTTAPPISAVK 118
           +KN+ +K  + ++T G T C SA VGTT   +   K
Sbjct: 317 SKNKIKKKEVDLVTNGETVCGSANVGTTVEILETEK 352


>UniRef50_Q89ZX0 Cluster: Putative uncharacterized protein; n=2;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides thetaiotaomicron
          Length = 615

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 254 SIVNIC*VRISLEKLVPASEIRTPVHRSMRMHRTSYHL 367
           SI   C   IS++  +P  E + P HR++R+   ++HL
Sbjct: 495 SIYQFCEAVISIDPEIPTPEQKYPYHRNIRIMDNTFHL 532


>UniRef50_Q7TW64 Cluster: POSSIBLE OXIDOREDUCTASE; n=23;
           Actinomycetales|Rep: POSSIBLE OXIDOREDUCTASE -
           Mycobacterium bovis
          Length = 394

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 380 SRRGLNDKTSGAFASNDAPVFESRW 306
           S + +ND T+G  A+N APV++  W
Sbjct: 209 SYKAMNDHTAGGLATNSAPVYKMPW 233


>UniRef50_Q01TS6 Cluster: Transposase IS66; n=1; Solibacter usitatus
           Ellin6076|Rep: Transposase IS66 - Solibacter usitatus
           (strain Ellin6076)
          Length = 963

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 68  QYSHNGCSTLQTETHYCFTAEIGGAVVPTRADAQEVLPPVITQI 199
           +Y+   C+ L+T T +  +A  G A  PT +   + LPP++ ++
Sbjct: 441 EYNLEDCAALRTVTEFVKSA-CGSASAPTESGKADALPPMVMRV 483


>UniRef50_Q6Z4I5 Cluster: DNA binding protein-like; n=4; Oryza
           sativa|Rep: DNA binding protein-like - Oryza sativa
           subsp. japonica (Rice)
          Length = 544

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 309 LAGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCASARVGTTAPP 133
           L+GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + RV      
Sbjct: 28  LSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKK 87

Query: 132 ISAV 121
           ++AV
Sbjct: 88  LNAV 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,500,838
Number of Sequences: 1657284
Number of extensions: 7732294
Number of successful extensions: 16443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16441
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)