Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f08
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    32   0.14 
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.41 
01_06_1749 - 39636951-39638102                                         27   5.1  
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894...    27   6.7  
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891...    27   6.7  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    27   6.7  
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225...    26   8.9  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -3

Query: 339 IERCTGVRISLAGTNFSNEIRTQQMFTIDFHGE 241
           I RCTGV I   G N   +I T      DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 309 LAGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCASARVGTTAPP 133
           L+GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + RV      
Sbjct: 28  LSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKK 87

Query: 132 ISAV 121
           ++AV
Sbjct: 88  LNAV 91


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 69  SIVTTAAPPFKPKRITA 119
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>04_04_1344 +
           32787574-32787632,32788488-32789070,32789211-32789423,
           32789884-32790173,32791201-32791312,32791394-32791630,
           32791714-32792394
          Length = 724

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 127 CREAVMRFGLKGGAAVVTILRP*NYISRCVAHLSCRCLW 11
           C     +FG+   A V  ILRP N+IS+      C C W
Sbjct: 342 CSTNSFQFGIFEQALVSGILRPGNFISKI-----CYCFW 375


>04_03_0685 +
           18687520-18687787,18688637-18688725,18689102-18689195,
           18689237-18689304,18690300-18690383,18690458-18690745,
           18691474-18691626
          Length = 347

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 302 PASEIRTPVHRSMRMHRTSYH 364
           PA+  RTP+H   R+H  S H
Sbjct: 8   PAAPHRTPIHHDKRLHLFSTH 28


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -3

Query: 336 ERCTGVRISLAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIIICVITGGRTSCASA 157
           E+C  V  S  G    +++ T Q+F +D  G    + ++ +    +  +  G   + AS 
Sbjct: 454 EQCIDVLPSQFGRQNQDQVTTNQVFEVD-QGMDCAAVSEGEWADTLTDISVGYLLTEASR 512

Query: 156 RVGTTAPPISAVK 118
              T  P  S VK
Sbjct: 513 GANTDCPGTSVVK 525


>07_03_0961 -
           22921761-22921850,22922204-22922338,22922409-22922531,
           22922621-22922707,22922780-22922831,22922939-22923063,
           22923724-22923932,22924206-22924407,22924526-22924630,
           22925353-22925414,22925755-22925944,22926017-22926112,
           22926203-22926305,22927019-22927122,22927264-22927395,
           22928257-22928343,22929121-22929206,22929291-22929383,
           22932197-22932284,22932402-22932514,22932621-22932743,
           22934153-22934204,22934365-22934408,22934498-22934571,
           22934655-22934746,22935594-22935661,22937146-22937221,
           22937323-22937679
          Length = 1055

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 359 KTSGAFASNDAPVFESRWRVPIFLMKYVLNK 267
           K  GAF  N   V    WR+ +F+ +  +NK
Sbjct: 464 KKVGAFLKNVTTVLSDLWRILLFVAQNEINK 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,495,250
Number of Sequences: 37544
Number of extensions: 226926
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)