Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f08
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   8.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 323 PVHRSMRMHRTSYHLGH 373
           P HR + ++++ +HL H
Sbjct: 62  PEHRDLPIYQSHHHLHH 78


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +1

Query: 253 VNREHLLSTYFIRKIGTRQRDSN 321
           +    +  TYF+      Q DSN
Sbjct: 10  ITNSSITETYFVSAYNLNQEDSN 32


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 13  IDIYNLNAPHTLRYSSKVSV*SQRL 87
           ID Y L A +T  Y +K +V  QRL
Sbjct: 195 IDYYLLAANYTGWYLTKHNVPEQRL 219


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 13  IDIYNLNAPHTLRYSSKVSV*SQRL 87
           ID Y L A +T  Y +K +V  QRL
Sbjct: 195 IDYYLLAANYTGWYLTKHNVPEQRL 219


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 64  P*NYISRCVAHLSCRC 17
           P NY+  C   + C C
Sbjct: 72  PQNYLGICAEGMQCSC 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,228
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)