Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f07
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    30   0.37 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.49 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    28   1.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   3.4  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.0  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   6.0  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 397  EESPVDAAKGPSRYRREEDHWRFPRETSND 308
            + +P+D  +G  +Y+R  +H+R P + +ND
Sbjct: 1607 KSAPLDKLRGFMKYQRRSEHYRNPLKRTND 1636


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 539 FHNKLSQLTYVTSSASCPSYPKIL 610
           + N+LS+L YVTSS S P+Y + L
Sbjct: 691 YKNELSELMYVTSSYSQPAYMEFL 714


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
 Frame = +1

Query: 373 LQRQQE-ILPGLGLFDGEQAAP-LQLQQ---THDHETRASVRLQPSFSGRLVH--FGRLS 531
           L+RQQ  +LPGL   DG QA P L       T+   +++   L P  S    H  F  LS
Sbjct: 340 LERQQNAMLPGLASIDGLQALPHLDFSDSAVTNQSHSQSQNSLHPLISQSETHSIFSALS 399

Query: 532 GSIPQQAEPVNVCDV---FGLLSFVPEDL 609
            +    +   NV D    F L   +P DL
Sbjct: 400 ETPTPVSGNGNVADAPPDFSLSQVMPLDL 428


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 269 NSFSPALKSPVAFIV*SFTRKSPMIFFPSVARRSFCSVNRRFFP 400
           N++SPA+KSP A       R+S     P+ +R S  + N  ++P
Sbjct: 175 NNYSPAVKSPAA------QRRSSSYMVPANSRGSPANYNTPYYP 212


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 578 KTSHTLTGSACCGMEPLRRPKCTNRPLKL 492
           KT+  +    CC ++ L R  C +R LKL
Sbjct: 123 KTTCRIMWQLCCAIQYLHRQGCVHRDLKL 151


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 384 LTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEK 274
           L  QKD+   + K+ I D     +T+KA  D S G++
Sbjct: 159 LNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQ 195


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 363 LATDGKKIIGDFLVKLQTIKATGDF 289
           LA DG + IGDF V   T  A+G++
Sbjct: 422 LAGDGNQTIGDFYVMNWTTIASGEY 446


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 585 EAEDVTYVNWLSLLWNGAAKATEMYQPS 502
           + +DV   NWLS+   GA   T  Y PS
Sbjct: 790 KVQDVRKFNWLSMCTPGALPLTFSYFPS 817


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 312 TIKATGDFSAGEKLFNKYSSLD 247
           T+ AT D   GE+L+N Y  LD
Sbjct: 277 TMIATRDIKKGEQLWNTYGELD 298


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 675 PPSKSVALKPSDCTSLLVPEILKIFGYEGQEAEDVTYVN 559
           PP+  + +K +  T  +  EI   F  EG   E+  ++N
Sbjct: 90  PPAAPIPMKKASNTEPVEKEISSFFSEEGATKENEDFIN 128


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 491 QVLVDGWYISVALAAPFHNKLSQLTYVTSSASCPSYPKILSISGTKREVQSDGFSATLF 667
           Q+ +DG  +      P  +  S +TYV       S P+I     +K E  SD  S   F
Sbjct: 162 QLSIDGIILHTIFVPPKRSSSSCVTYVCLFLDSNSNPRINVYRWSKTETFSDASSYITF 220


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
 Frame = -3

Query: 602 SGTKDRRPKTSHTLTGSACCGME-PLRRPKCTNRPLKLGCRRTLARVS*SCVCWSWRGAA 426
           S +      +S TLT S+      P      ++    L    + +  S S    S   ++
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276

Query: 425 CSPSKSPSPGRISC*RCKRTVSLPTGRRSLAISS*NFKR*RQPETLVRAKNYSISTAVST 246
            S S SP+    +      + S PT   S  ISS +        TL  + + S S++ S+
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTSTSS-TISSSSSSSSSFSSTL-SSSSMSSSSSFSS 334

Query: 245 SPGAAGETSF*CTNSLETSSFSPT 174
           SP ++  T    ++S  +SSFS T
Sbjct: 335 SPTSSSSTISSSSSSPSSSSFSST 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,521
Number of Sequences: 5004
Number of extensions: 49088
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)