Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f07
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456...    30   1.5  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    29   2.7  
02_05_0985 - 33331257-33332498                                         29   2.7  
04_04_0539 + 26088245-26088556,26088806-26088931,26089300-260896...    29   3.6  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   3.6  
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540...    28   6.2  
01_01_0927 + 7332980-7333186,7334511-7335269,7336287-7336442,733...    28   8.3  

>07_03_1004 +
           23244479-23244648,23245104-23245276,23245535-23245638,
           23245849-23246037,23246508-23248076
          Length = 734

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 512 TNRPLKLGCRRTLARVS*SCVCWSWRGAACSPSKSPSPGRISC*RCKRTVSL 357
           T R   LG    LAR S  C+ + W      PS+  S  R+ C R +R + L
Sbjct: 101 TGRAESLGAHWFLARASGVCLVFPWPARRRCPSRRRSLFRLRCRRGRRQLHL 152


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 422 SPSKSPSPGRISC*RCKRTVSLPTGR 345
           SPS SPSP   +   C  T+S+PT R
Sbjct: 125 SPSSSPSPSPSTSDSCPSTISVPTHR 150


>02_05_0985 - 33331257-33332498
          Length = 413

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 452 VCWSWRGAACSPSKSPSPGR 393
           VC +WRGA   P+  PSP R
Sbjct: 38  VCRTWRGALAEPTPPPSPPR 57


>04_04_0539 +
           26088245-26088556,26088806-26088931,26089300-26089614,
           26090635-26090763,26091172-26091570
          Length = 426

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 536 PFHNKLSQLTYVTSSASCPSYPKILSISGTKREVQSDG 649
           P H+++  +TYV    +  + P ++   GT R + ++G
Sbjct: 247 PLHSQVLSVTYVKGGNTIDATPPVIEFGGTLRSLTTEG 284


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 554 SQLTYVTSSASCPSYPKILSISGTKREVQSDGFSATLFEGG 676
           S  ++V++ A+CP   K  SIS  ++  ++  F+  + EGG
Sbjct: 277 STASFVSTIATCPPTVKTFSISELEKATENFSFNKIIGEGG 317


>03_02_0069 +
           5401789-5401965,5403514-5403568,5403674-5405649,
           5405710-5405868,5406081-5406252,5406617-5406915,
           5407147-5407392
          Length = 1027

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 264 KYSSLDEPWGRWRDIVLMHKQPRNIF-VQPNTFHKGDAVELKR 139
           K+SS DE  GRWR +V + K P+  F    N   + +A  +KR
Sbjct: 15  KHSS-DEALGRWRRLVGVVKNPKRRFRFTANLDKRSEAAAMKR 56


>01_01_0927 +
           7332980-7333186,7334511-7335269,7336287-7336442,
           7336615-7337538,7338905-7339201
          Length = 780

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 190 DVSRLFVH*NDVSPAAPGLVETAVLIE*FFARTKVS---GCLYRLKFHEEIANDLLPVGS 360
           +VS+LF   +  +  A     T +L + F+ + +V        ++  +   A   L  G+
Sbjct: 554 NVSQLFDMNSQTTNVANSAAMTGILGQSFYQQQQVPLQYNLPSQMLLNPAFAGQQLNYGA 613

Query: 361 ETVLLQRQQEILPGLGLFD 417
            +VLL +QQ++L  LG F+
Sbjct: 614 MSVLLAQQQQLLQNLGNFN 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,138
Number of Sequences: 37544
Number of extensions: 353506
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)