Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f07
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 130 9e-31
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 130 9e-31
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 130 9e-31
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 29 2.4
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 27 9.8
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 130 bits (314), Expect = 9e-31
Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Frame = -2
Query: 618 EILKIFGYEGQEAEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRXXXX 439
+IL+IFGY G A++V YVNWLS + G A E YQ K W QAH AR+V+ +
Sbjct: 549 DILEIFGYTGDLAQEVKYVNWLSEIRAGLL-ALEFYQAEQKKWGQAHCYARYVLTKVVLE 607
Query: 438 XXXXXXXXXXXE--PGK-NLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLF 268
+ GK +L L ++ + + G+ + FL KLQ K+TGDF G++LF
Sbjct: 608 AGQGFVKIEETKGEDGKPDLHFKLDRNLIDSVGRPAVNTFLAKLQAYKSTGDFEGGKRLF 667
Query: 267 NKYSSLDEPWGRWRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFP 88
Y + + WRDI + ++PR +FVQPNT K + L Y + G++ S+V+R+
Sbjct: 668 ESYGVVGDTELHWRDICIARRKPRRLFVQPNTVEKNGEISLVTYSSDVSGVIQSFVERYE 727
Query: 87 NTKVDDI 67
+ V+D+
Sbjct: 728 KSAVEDL 734
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -1
Query: 703 YDSKFTTLGSAFEECRAEAVGLYL 632
+ SKF L SA+EECRAEAVG L
Sbjct: 521 WSSKFGPLASAYEECRAEAVGYVL 544
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical protein
F02E9.9a protein.
Length = 707
Score = 130 bits (314), Expect = 9e-31
Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Frame = -2
Query: 618 EILKIFGYEGQEAEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRXXXX 439
+IL+IFGY G A++V YVNWLS + G A E YQ K W QAH AR+V+ +
Sbjct: 511 DILEIFGYTGDLAQEVKYVNWLSEIRAGLL-ALEFYQAEQKKWGQAHCYARYVLTKVVLE 569
Query: 438 XXXXXXXXXXXE--PGK-NLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLF 268
+ GK +L L ++ + + G+ + FL KLQ K+TGDF G++LF
Sbjct: 570 AGQGFVKIEETKGEDGKPDLHFKLDRNLIDSVGRPAVNTFLAKLQAYKSTGDFEGGKRLF 629
Query: 267 NKYSSLDEPWGRWRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFP 88
Y + + WRDI + ++PR +FVQPNT K + L Y + G++ S+V+R+
Sbjct: 630 ESYGVVGDTELHWRDICIARRKPRRLFVQPNTVEKNGEISLVTYSSDVSGVIQSFVERYE 689
Query: 87 NTKVDDI 67
+ V+D+
Sbjct: 690 KSAVEDL 696
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -1
Query: 703 YDSKFTTLGSAFEECRAEAVGLYL 632
+ SKF L SA+EECRAEAVG L
Sbjct: 483 WSSKFGPLASAYEECRAEAVGYVL 506
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical protein
F02E9.9b protein.
Length = 745
Score = 130 bits (314), Expect = 9e-31
Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Frame = -2
Query: 618 EILKIFGYEGQEAEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMRXXXX 439
+IL+IFGY G A++V YVNWLS + G A E YQ K W QAH AR+V+ +
Sbjct: 549 DILEIFGYTGDLAQEVKYVNWLSEIRAGLL-ALEFYQAEQKKWGQAHCYARYVLTKVVLE 607
Query: 438 XXXXXXXXXXXE--PGK-NLLLTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEKLF 268
+ GK +L L ++ + + G+ + FL KLQ K+TGDF G++LF
Sbjct: 608 AGQGFVKIEETKGEDGKPDLHFKLDRNLIDSVGRPAVNTFLAKLQAYKSTGDFEGGKRLF 667
Query: 267 NKYSSLDEPWGRWRDIVLMHKQPRNIFVQPNTFHKGDAVELKRYPATAEGMVASWVDRFP 88
Y + + WRDI + ++PR +FVQPNT K + L Y + G++ S+V+R+
Sbjct: 668 ESYGVVGDTELHWRDICIARRKPRRLFVQPNTVEKNGEISLVTYSSDVSGVIQSFVERYE 727
Query: 87 NTKVDDI 67
+ V+D+
Sbjct: 728 KSAVEDL 734
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -1
Query: 703 YDSKFTTLGSAFEECRAEAVGLYL 632
+ SKF L SA+EECRAEAVG L
Sbjct: 521 WSSKFGPLASAYEECRAEAVGYVL 544
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 596 TKDRRPKTSHTLTGSACCGMEPLRRPKCTNRP 501
T P + TGS C ++ L RP CTN P
Sbjct: 263 TTTPNPCLAFNCTGSGPCQLDSLNRPYCTNCP 294
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 397 EESPVDAAKGPSRYRREEDHWRFPRETSND 308
++ P+D +G +Y R++ +R P+E ND
Sbjct: 1697 KDEPLDKLRGFVKYNRQKKMYRDPKERLND 1726
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 397 EESPVDAAKGPSRYRREEDHWRFPRETSND 308
++ P+D +G +Y R++ +R P+E ND
Sbjct: 1697 KDEPLDKLRGFVKYNRQKKMYRDPKERLND 1726
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 253 SRRALGPLERHRSNAQTA*KHLRSAQHLPQRRRGRAKA 140
SRR+ RHRS+++ + +A+ P +RR R+++
Sbjct: 154 SRRSSRRRSRHRSSSKARGRRASTAKKTPAKRRSRSRS 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,992
Number of Sequences: 27780
Number of extensions: 284357
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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