Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f06
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    29   4.3  
01_06_0203 - 27487469-27489787                                         28   5.7  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   7.6  

>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +3

Query: 306 FALRGAKRLGYPHVAVIVFKVY*SLGVKLAAXHFNDRRSVDGAQQHPLVFCKQNGFSGNA 485
           F +RG K    PH  V+ F +   L     A H N+RR V G  +  L   +      NA
Sbjct: 700 FMIRGKKNFLPPHPLVMGFGILFRLDESSLASHLNERR-VRGEDEEALPDVESQKLESNA 758


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 263 DYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 120
           DYD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 383 TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 219
           TE   N  + + N  I+K      +K+TTR DD  +  Q    M+LS+   T  E
Sbjct: 525 TEDDANLASSSKNTMISKHHNTVDQKSTTRKDDSRNRSQK--IMELSEVRGTNTE 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,306,936
Number of Sequences: 37544
Number of extensions: 305041
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)