Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f03
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 0.91
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 25 3.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 4.8
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 24 4.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 24 6.4
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 24 6.4
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 23 8.5
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 23 8.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 8.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 23 8.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 23 8.5
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 23 8.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 23 8.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 8.5
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.6 bits (56), Expect = 0.91
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 96 TSTPAG-FTNVLNAPSVRNLGNNRYQPGYQLSNN--RFVSTSDINRITRNNDVPNIRNVF 266
T TP +N LN+ V N + P S+N RF TS+ + I + + P +V+
Sbjct: 224 TYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVY 283
Query: 267 QGISDPQI 290
Q P+I
Sbjct: 284 QTDITPEI 291
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 186 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQI 290
SN+R V T+D N + D+ N++ +S Q+
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL 234
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.2 bits (50), Expect = 4.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 186 IIDSPADICCFQG---CVHWAR*AHL*NRRECLLKDAYYQQEN 67
++D P +C C W R N R LL DA+Y+Q N
Sbjct: 894 LLDHPLRVCVLLAQIDCNLWIR-----NGRSILLTDAFYRQLN 931
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 39 VNKLYPNQASFLADNTRLLTSTPAGF 116
+N L PNQASF+ N+ L GF
Sbjct: 695 LNHLSPNQASFVIRNSSLSEYGVLGF 720
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 163 LLFPRLRTLGALSTFVKPAGVLVKR 89
L+FP L +LGA ++ KP+ ++ +
Sbjct: 290 LIFPALSSLGAWISWCKPSSAVLSQ 314
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 6.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 45 KLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSN 191
KLY +A F T L + T PS+R + N +P + SN
Sbjct: 742 KLYRERAKFDIFRTELSKNHTGEITRKATEPSIRIICNFCRKPIFPFSN 790
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 23.4 bits (48), Expect = 8.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -2
Query: 267 EIHCVCWGHRCYE 229
+I CVC+G+R Y+
Sbjct: 357 QIKCVCYGNRIYK 369
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 48 LYPNQASFLADNTRLLTSTPAGFTNVLNAPSV 143
L+PN S + R++ + AG TNV P V
Sbjct: 439 LWPNGNSLVQTYERVVAAQAAGNTNVKGFPYV 470
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 7 FK*VFLQIFVESINCIL 57
F+ FL+IF E NC+L
Sbjct: 812 FELAFLEIFYELFNCLL 828
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 60 QASFLADNTRLLTSTPAGFT--NVLNAP 137
Q + ++D+T T+ P FT NV N P
Sbjct: 390 QQNLVSDDTNASTAVPVAFTNDNVSNVP 417
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 213 DINRITRNNDVPNIRNVFQGISDPQINSLRQLRR 314
D N TR+ P RN ++ + DP++ L R
Sbjct: 2 DFNTSTRSKSQPVQRNNYKVLYDPELGIKENLGR 35
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 311 PQLAQ*VYLRV*NALKYIAYVGDIVVTSDSV 219
P+L Q +Y A K +AY+GD+ V S+
Sbjct: 483 PELFQ-LYRSRNRAQKLLAYLGDLAVNGSSI 512
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.4 bits (48), Expect = 8.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 19 FLQIFVESINCILIRPVFLLIIRVF*QALPPVSQMCSTR 135
F++I++ + I I LLI+ +F L P+ + CS R
Sbjct: 1568 FIRIWIMAALPIAISTAALLILLMFSCMLGPLLRKCSKR 1606
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 57 NQASFLADNTRLLTSTPAGFTNVLNA--PSVRNLGNNRYQP 173
N ++ + +T L TSTP ++VLN+ P + G N P
Sbjct: 907 NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTP 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,908
Number of Sequences: 5004
Number of extensions: 24156
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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