Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f03
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0145 + 7163922-7165604 30 0.45
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 28 1.8
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 27 2.4
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 27 2.4
04_04_0500 - 25677767-25680850 27 2.4
01_06_1608 - 38612754-38616947,38617030-38617095 27 3.2
08_02_1198 + 25204896-25206755 27 4.2
06_01_0867 - 6600847-6601413,6601954-6602181 27 4.2
03_06_0774 + 36171177-36173099 27 4.2
02_05_0734 + 31318380-31318610,31319422-31319988 26 5.6
06_03_1056 + 27239176-27242361 26 7.4
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 25 9.7
05_03_0113 + 8526595-8527440,8527662-8528357 25 9.7
>02_02_0145 + 7163922-7165604
Length = 560
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 66 SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 245
SF A+N + P + + N ++ NL N+ ++ N F ST N+I ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533
Query: 246 PNIRNVFQG 272
I QG
Sbjct: 534 KEIGLQSQG 542
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 225 ITRNNDVPNIRNVFQGISDPQINSLRQL 308
+ R + VP++R G+ PQ+NS Q+
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQI 135
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +3
Query: 27 NLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVS 206
N R++N + + S A R++ ++ S R YQ R +
Sbjct: 251 NARQINNTHHSTTSSSAPAWRMVKEQKDSHLDLERLDSARKRLQENYQEAQNAKKQRTIQ 310
Query: 207 TSDINRITRNNDVPNIRNVF 266
DIN I + P RN F
Sbjct: 311 VMDINEIPK----PKNRNAF 326
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 180 QLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINS 296
+ ++N F+S+S I+ + +V R VF GI P I S
Sbjct: 536 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 574
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 186 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDP 284
S++ F + ++ + DVPN R VF GI+ P
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACP 222
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 227 DSVYV*SAHKPVVR*LIARLISVVSKVAYTGRVEHICETG--GSAC*KTRIISKKTGLIR 54
D Y+ A + V L RLIS ++ G + + E G+ K I S+ +GL++
Sbjct: 974 DVPYLKKAFEAVQELLSQRLISAGHDISDGGLIVSVLEMAFAGNCGVKLNIDSEDSGLLQ 1033
Query: 53 IQFIDSTKICKKTHLK 6
F + + + HLK
Sbjct: 1034 ALFAEELGLLLEVHLK 1049
>08_02_1198 + 25204896-25206755
Length = 619
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQ 182
T+L VN Q ++ N S+PA N N+ + N+ +R GYQ
Sbjct: 430 TSLSHVNTTETLQHQYVQGN---FVSSPAAVVNNYNSNQITNVNPSRIYMGYQ 479
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 229 LVTTMSPTYAMYFRAFQTLK*THCANCGAW 318
L+ M+P A++F +F T+K T +CG W
Sbjct: 162 LIAGMTPKTAIFFFSFATIK-TVDDHCGLW 190
>03_06_0774 + 36171177-36173099
Length = 640
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 183 LSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQL 308
LS++ VS S I+ ++ + + R+VFQ IS+P++ S L
Sbjct: 489 LSSDISVSNSLIDMYSKCKCMGDARSVFQSISEPKVVSWNAL 530
>02_05_0734 + 31318380-31318610,31319422-31319988
Length = 265
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 229 LVTTMSPTYAMYFRAFQTLK*THCANCGAW 318
LV+ M+P +++F +F T+K T +CG W
Sbjct: 163 LVSGMTPRTSIFFFSFATIK-TVDDHCGLW 191
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 120 NVLNAPSVRNLGNNRYQPGYQLSNNRFVST--SDINRITRNNDVPNIRNVFQGISDPQIN 293
N L+ P ++G LS NRF +++ + RNVF G P ++
Sbjct: 496 NQLDGPIPPDVGQLTKLAFMALSGNRFSGEVPTELESCQSLEFLDLARNVFVGSIPPSLS 555
Query: 294 SLRQLRRM 317
L+ LRR+
Sbjct: 556 GLKGLRRL 563
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 27 NLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVS 206
++RR NKL + FLA+N L F P + N + G+Q+ RF+
Sbjct: 920 DIRRYNKLEEDDHEFLANNMPNLQMLVLRFEAPQREPIIIN------RTGFQML-ERFLV 972
Query: 207 TSDINRIT-RNNDVPNIRNV 263
S + RIT + +P ++++
Sbjct: 973 ESRVPRITFQEGAMPKLKHL 992
>05_03_0113 + 8526595-8527440,8527662-8528357
Length = 513
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 216 CLKCSQTGC*IIDSPADICC 157
C KC+Q G + D ++CC
Sbjct: 207 CSKCAQKGHVVADCTIEVCC 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,985,337
Number of Sequences: 37544
Number of extensions: 148864
Number of successful extensions: 384
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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