Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18f03
(319 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U72618-1|AAC51137.1| 631|Homo sapiens hepatic nuclear factor 1-... 32 0.32
M57732-1|AAA88077.1| 631|Homo sapiens hepatic nuclear factor 1 ... 32 0.32
EF641294-1|ABR09270.1| 631|Homo sapiens transcription factor 1,... 32 0.32
BC104910-1|AAI04911.1| 631|Homo sapiens transcription factor 1,... 32 0.32
BC104908-1|AAI04909.1| 631|Homo sapiens transcription factor 1,... 32 0.32
BC033308-1|AAH33308.1| 767|Homo sapiens DAZ interacting protein... 29 3.0
AK057406-1|BAB71474.1| 539|Homo sapiens protein ( Homo sapiens ... 29 3.0
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 29 4.0
U18270-1|AAB60433.1| 694|Homo sapiens thymopoietin alpha protein. 28 5.2
U09086-1|AAB60329.1| 694|Homo sapiens thymopoietin alpha protein. 28 5.2
S76736-1|AAB33958.1| 526|Homo sapiens TRPP protein. 28 5.2
AJ430032-1|CAD22550.1| 1156|Homo sapiens mucin 4 protein. 28 5.2
AJ400858-1|CAC14143.1| 2167|Homo sapiens MUC4 protein splice var... 28 5.2
AJ277412-1|CAC10061.1| 2117|Homo sapiens mucin 4, variant V3 pro... 28 5.2
AJ276359-1|CAB81773.1| 2169|Homo sapiens mucin 4 protein. 28 5.2
AJ242550-1|CAB85606.1| 1125|Homo sapiens MUC4/X apomucin protein. 28 5.2
AJ242549-1|CAB85605.1| 1176|Homo sapiens MUC4/Y apomucin protein. 28 5.2
AJ242548-1|CAB85604.1| 930|Homo sapiens sv8-MUC4 apomucin protein. 28 5.2
AJ010901-1|CAB38059.1| 1156|Homo sapiens MUC4 protein. 28 5.2
AF522055-1|AAM66747.1| 2169|Homo sapiens MUC4 protein. 28 5.2
X52079-1|CAA36298.1| 622|Homo sapiens ITF-2 DNA binding protein... 27 9.1
M74719-1|AAA60311.1| 667|Homo sapiens SEF2-1B protein protein. 27 9.1
BC125085-1|AAI25086.1| 667|Homo sapiens transcription factor 4 ... 27 9.1
BC125084-1|AAI25085.1| 671|Homo sapiens TCF4 protein protein. 27 9.1
AB209741-1|BAD92978.1| 435|Homo sapiens transcription factor 4 ... 27 9.1
>U72618-1|AAC51137.1| 631|Homo sapiens hepatic nuclear factor
1-alpha protein.
Length = 631
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 194
TNL + L P + F +D S TPA L+ PS G QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587
Query: 195 RFVSTSDI 218
VS+S +
Sbjct: 588 PTVSSSSL 595
>M57732-1|AAA88077.1| 631|Homo sapiens hepatic nuclear factor 1
protein.
Length = 631
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 194
TNL + L P + F +D S TPA L+ PS G QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587
Query: 195 RFVSTSDI 218
VS+S +
Sbjct: 588 PTVSSSSL 595
>EF641294-1|ABR09270.1| 631|Homo sapiens transcription factor 1,
hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
protein.
Length = 631
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 194
TNL + L P + F +D S TPA L+ PS G QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587
Query: 195 RFVSTSDI 218
VS+S +
Sbjct: 588 PTVSSSSL 595
>BC104910-1|AAI04911.1| 631|Homo sapiens transcription factor 1,
hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
protein.
Length = 631
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 194
TNL + L P + F +D S TPA L+ PS G QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587
Query: 195 RFVSTSDI 218
VS+S +
Sbjct: 588 PTVSSSSL 595
>BC104908-1|AAI04909.1| 631|Homo sapiens transcription factor 1,
hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
protein.
Length = 631
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 194
TNL + L P + F +D S TPA L+ PS G QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587
Query: 195 RFVSTSDI 218
VS+S +
Sbjct: 588 PTVSSSSL 595
>BC033308-1|AAH33308.1| 767|Homo sapiens DAZ interacting protein
1-like protein.
Length = 767
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 162 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 278
++QP + + R +ST D++R+ R DV ++ GI+
Sbjct: 25 KFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGIT 63
>AK057406-1|BAB71474.1| 539|Homo sapiens protein ( Homo sapiens
cDNA FLJ32844 fis, clone TESTI2003354, weakly similar to
TRICHOHYALIN. ).
Length = 539
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 162 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 278
++QP + + R +ST D++R+ R DV ++ GI+
Sbjct: 25 KFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGIT 63
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 24 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNA 134
TN+ + Y +Q+S LAD++ + T++ G T+VL +
Sbjct: 7777 TNVATTSSGYKSQSSVLADSSPMCTTSTMGDTSVLTS 7813
>U18270-1|AAB60433.1| 694|Homo sapiens thymopoietin alpha protein.
Length = 694
Score = 28.3 bits (60), Expect = 5.2
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +3
Query: 45 KLYPNQASFLADN-TRLLTSTPAGFTNVLNAPSVRNLGNN---RY---QPGYQLSNNRFV 203
KLY + L + T +STP T +A + R G+N RY + G + + +
Sbjct: 140 KLYEKKLLKLREQGTESRSSTPLP-TISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK 198
Query: 204 STSDINRITRNNDVPNIRNVFQGISDPQINS 296
ST DI + P+ FQGIS P+I++
Sbjct: 199 STRDIVPFSELGTTPSGGGFFQGISFPEIST 229
>U09086-1|AAB60329.1| 694|Homo sapiens thymopoietin alpha protein.
Length = 694
Score = 28.3 bits (60), Expect = 5.2
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +3
Query: 45 KLYPNQASFLADN-TRLLTSTPAGFTNVLNAPSVRNLGNN---RY---QPGYQLSNNRFV 203
KLY + L + T +STP T +A + R G+N RY + G + + +
Sbjct: 140 KLYEKKLLKLREQGTESRSSTPLP-TISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK 198
Query: 204 STSDINRITRNNDVPNIRNVFQGISDPQINS 296
ST DI + P+ FQGIS P+I++
Sbjct: 199 STRDIVPFSELGTTPSGGGFFQGISFPEIST 229
>S76736-1|AAB33958.1| 526|Homo sapiens TRPP protein.
Length = 526
Score = 28.3 bits (60), Expect = 5.2
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +3
Query: 45 KLYPNQASFLADN-TRLLTSTPAGFTNVLNAPSVRNLGNN---RY---QPGYQLSNNRFV 203
KLY + L + T +STP T +A + R G+N RY + G + + +
Sbjct: 140 KLYEKKLLKLREQGTESRSSTPLP-TISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK 198
Query: 204 STSDINRITRNNDVPNIRNVFQGISDPQINS 296
ST DI + P+ FQGIS P+I++
Sbjct: 199 STRDIVPFSELGTTPSGGGFFQGISFPEIST 229
>AJ430032-1|CAD22550.1| 1156|Homo sapiens mucin 4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 852 CAALGSSFLCQNQSCPVNYCYNQGH-CY 878
>AJ400858-1|CAC14143.1| 2167|Homo sapiens MUC4 protein splice variant
sv21 protein.
Length = 2167
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 1865 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1891
>AJ277412-1|CAC10061.1| 2117|Homo sapiens mucin 4, variant V3 protein.
Length = 2117
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 1813 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1839
>AJ276359-1|CAB81773.1| 2169|Homo sapiens mucin 4 protein.
Length = 2169
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 1865 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1891
>AJ242550-1|CAB85606.1| 1125|Homo sapiens MUC4/X apomucin protein.
Length = 1125
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 821 CAALGSSFLCQNQSCPVNYCYNQGH-CY 847
>AJ242549-1|CAB85605.1| 1176|Homo sapiens MUC4/Y apomucin protein.
Length = 1176
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 872 CAALGSSFLCQNQSCPVNYCYNQGH-CY 898
>AJ242548-1|CAB85604.1| 930|Homo sapiens sv8-MUC4 apomucin protein.
Length = 930
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 626 CAALGSSFLCQNQSCPVNYCYNQGH-CY 652
>AJ010901-1|CAB38059.1| 1156|Homo sapiens MUC4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 852 CAALGSSFLCQNQSCPVNYCYNQGH-CY 878
>AF522055-1|AAM66747.1| 2169|Homo sapiens MUC4 protein.
Length = 2169
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 315 CAAIGAMSLFEGLKCPEIHCVCWGHRCY 232
CAA+G+ L + CP +C GH CY
Sbjct: 1865 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1891
>X52079-1|CAA36298.1| 622|Homo sapiens ITF-2 DNA binding protein
protein.
Length = 622
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 54 PNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLS 188
P +S + T+ + P G + + APS NR PGY S
Sbjct: 115 PLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSS 159
>M74719-1|AAA60311.1| 667|Homo sapiens SEF2-1B protein protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 54 PNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLS 188
P +S + T+ + P G + + APS NR PGY S
Sbjct: 160 PLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSS 204
>BC125085-1|AAI25086.1| 667|Homo sapiens transcription factor 4
protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 54 PNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLS 188
P +S + T+ + P G + + APS NR PGY S
Sbjct: 160 PLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSS 204
>BC125084-1|AAI25085.1| 671|Homo sapiens TCF4 protein protein.
Length = 671
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 54 PNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLS 188
P +S + T+ + P G + + APS NR PGY S
Sbjct: 160 PLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSS 204
>AB209741-1|BAD92978.1| 435|Homo sapiens transcription factor 4
isoform b variant protein.
Length = 435
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 54 PNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLS 188
P +S + T+ + P G + + APS NR PGY S
Sbjct: 45 PLHSSAMEVQTKKVRKVPPGLPSSVYAPSASTADYNRDSPGYPSS 89
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,484,291
Number of Sequences: 237096
Number of extensions: 853874
Number of successful extensions: 1459
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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