Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f03
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 177 YQLSNNRFVSTSDINRITRNN 239
           Y++ N      S +N+ITRN+
Sbjct: 541 YEIDNWMLDLNSGLNKITRNS 561


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 177 YQLSNNRFVSTSDINRITRNN 239
           Y++ N      S +N+ITRN+
Sbjct: 541 YEIDNWMLDLNSGLNKITRNS 561


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 141 VRNLGNNRYQPGYQLSNNRFVSTSDINRITRNN 239
           + +L NN     Y   NN + + ++ N    NN
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNN 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = -2

Query: 267 EIHCVCWGHRCYE*FCLCLKCSQTGC 190
           E HC    H C    C C      GC
Sbjct: 740 EAHCFALCHCCDFDACDCEMTCPAGC 765


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,166
Number of Sequences: 438
Number of extensions: 1552
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)