Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f02
         (372 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RST2 Cluster: Chromosome 12 SCAF14999, whole genome s...    33   1.7  
UniRef50_Q3LW02 Cluster: T-complex protein theta SU; n=1; Bigelo...    33   1.7  
UniRef50_Q6C0Z0 Cluster: Yarrowia lipolytica chromosome F of str...    32   2.9  
UniRef50_A5WD04 Cluster: Major facilitator superfamily MFS_1; n=...    31   8.8  
UniRef50_Q4N4F3 Cluster: Putative uncharacterized protein; n=2; ...    31   8.8  
UniRef50_A2EFX5 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  

>UniRef50_Q4RST2 Cluster: Chromosome 12 SCAF14999, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 12
           SCAF14999, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 832

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLK-VLFSQLQLKNLIVVKNWY 173
           V+K++F  + S++LK VLFS + L  L VV NWY
Sbjct: 667 VHKLIFPFSGSSFLKHVLFSAVTLFELTVVNNWY 700


>UniRef50_Q3LW02 Cluster: T-complex protein theta SU; n=1;
           Bigelowiella natans|Rep: T-complex protein theta SU -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 513

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -1

Query: 105 KERLKTLFYKQTFLLKNNCISL 40
           K RLKT  YK T L+ NNC+SL
Sbjct: 187 KTRLKTKMYKGTCLISNNCVSL 208


>UniRef50_Q6C0Z0 Cluster: Yarrowia lipolytica chromosome F of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome F of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 1845

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 93  LNALSTYLKVLFSQLQLKN---LIVVKNWYKKYSH-SVASALMALSVLSVYQSPRTLTM* 260
           L  L T+L    S++Q        ++  W ++++H S   A +A   L V  SPRTL M 
Sbjct: 630 LMCLQTHLFTNISKIQSDKRPAAALLVRWVQEFAHQSNDVAYLACVNLGVLNSPRTLNME 689

Query: 261 MPPH 272
            PPH
Sbjct: 690 KPPH 693


>UniRef50_A5WD04 Cluster: Major facilitator superfamily MFS_1; n=1;
           Psychrobacter sp. PRwf-1|Rep: Major facilitator
           superfamily MFS_1 - Psychrobacter sp. PRwf-1
          Length = 465

 Score = 30.7 bits (66), Expect = 8.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 150 LIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLTM*MPPHET 278
           L+V+ NW  +YS    +AL+ L+ L +++ P    + +  H+T
Sbjct: 173 LLVLGNWSWRYSFFAMAALIVLNTLPIWRYPENKHIAISQHQT 215


>UniRef50_Q4N4F3 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 323

 Score = 30.7 bits (66), Expect = 8.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 72  FVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYS 185
           ++Y ++ LN L+T LK +FS+L++KN+   K   K  S
Sbjct: 227 YIYTLI-LNKLNTLLKPIFSKLRIKNIKFDKELLKSAS 263


>UniRef50_A2EFX5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 524

 Score = 30.7 bits (66), Expect = 8.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 78  YKIVFLNALSTYLKVLFSQLQ---LKNLIVVKNWYKKYSHSVASAL 206
           YK ++++ LSTYL  LFS      +  LI V N+ K ++  + S L
Sbjct: 144 YKNLWISRLSTYLNSLFSMTNNSCIPKLISVYNFIKSFNDEIPSGL 189


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,145,733
Number of Sequences: 1657284
Number of extensions: 5598062
Number of successful extensions: 11124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11123
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 13594373344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)