Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f02
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   0.94 
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   1.2  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   5.0  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    24   8.8  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    24   8.8  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 90  FLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLTM*MPP 269
           FLN  S  L++   Q  L   I     + K+ HS  S  + LS L + +   T  + +PP
Sbjct: 100 FLNFRSRMLELFLRQCLLHPCIRSNPIFDKFIHSTVSWHVTLSSLDLPKDSNTDPLRLPP 159

Query: 270 HET 278
             T
Sbjct: 160 IAT 162


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 63  AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLS 227
           A  FV+ I  L AL   +   +S++  K  +V+   + +Y H VA  L    VL+
Sbjct: 3   ASFFVFAISALQALQASVASAYSEVPGKRSVVLNLQHSQYDH-VARKLERTKVLN 56


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 93  LNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQ 236
           LNA +    +L++Q  +KNL   KN + K    V  AL  L V  + Q
Sbjct: 282 LNANTDQSLILYTQSDVKNLHFGKNKHTKPHLLVMDALSNLYVWKILQ 329


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +3

Query: 21  KPQYNKITIY--NYF*AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSV 194
           + ++ KI +   +YF   +    + FL     +L +    LQ+  LI +K W     H+ 
Sbjct: 709 RSKFAKINVIERSYFVFALLYSFLSFLQRPLGHLSLFSCFLQILLLIQLKQWQPSVGHNF 768

Query: 195 ASALMALSVLS 227
            S  + L  LS
Sbjct: 769 FSVTLGLLGLS 779


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 62  SKNVCL*NSVFKRSFYLPKSII 127
           +KN+ + +  +K++F LPK++I
Sbjct: 86  AKNIGIIDKYYKKNFILPKTLI 107


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 69  MFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYK 176
           M++  + FLN L   + + F    + ++  VK W K
Sbjct: 238 MYLGYVYFLNKLKPSVSLRFHSPMIDDISAVKTWSK 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,054
Number of Sequences: 5004
Number of extensions: 25658
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)