Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f02
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285           32   0.13 
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147...    28   2.7  
09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499...    27   3.6  
11_04_0288 - 15802010-15803506                                         27   4.7  
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531...    26   8.2  

>01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285
          Length = 321

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/55 (29%), Positives = 32/55 (58%)
 Frame = +3

Query: 93  LNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLTM 257
           ++  ST +++LFSQ+ + N  + K +  + SH VASA++    + +Y +  T  +
Sbjct: 209 IHVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGETFAL 263


>10_08_0959 -
           21813756-21814097,21814462-21814570,21814688-21814740,
           21814849-21815049,21815320-21815433,21815513-21815671,
           21816490-21816849,21816928-21817149,21817967-21818093,
           21818887-21819023,21819169-21819292,21819665-21820174,
           21820255-21820436,21820812-21820862,21821114-21821266,
           21821339-21821437,21821519-21821861,21821957-21822030,
           21822105-21823025,21823133-21823257,21823419-21823461,
           21823574-21823762,21824814-21825074,21825228-21825387,
           21826200-21826363,21826523-21827009,21827090-21827431,
           21827519-21827836,21828001-21828041,21828136-21828388,
           21829158-21829261,21830198-21830386,21830543-21831196,
           21831320-21831610,21831739-21831882,21832107-21832205,
           21832549-21832657,21832739-21832923,21833008-21833121,
           21833270-21833401,21833483-21833815,21833945-21834436,
           21834773-21834847,21834917-21835066,21835143-21835241,
           21835463-21835547,21837188-21837375,21837513-21837647,
           21837729-21837849,21838127-21838194,21838275-21838370,
           21838450-21838554,21838665-21838980,21839053-21839142,
           21840011-21840181,21840850-21841010,21841088-21841270,
           21841839-21841940,21842515-21842632,21842704-21842798,
           21842972-21843022,21843107-21843241,21843333-21843436,
           21844249-21844414,21844649-21844773,21845220-21845316
          Length = 4181

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 87  VFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVY 233
           V ++A   +++VLF   +  +L  V   YK  +  VA+ +  L  LSV+
Sbjct: 56  VLVSAPQQFIQVLFGDCESTHLDAVTRHYKSIALRVATVIQNLGNLSVW 104


>09_06_0248 +
           21848346-21848907,21849026-21849583,21849889-21849980,
           21850122-21850167,21850236-21850423
          Length = 481

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 30  YNKITIYNYF*AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSH 188
           Y + TI  YF         +  + L +Y   L S   +KN+ + K ++  YSH
Sbjct: 360 YTQSTISQYFTTAAVKCNCILDSRLPSYENFLVSARYIKNIHINKVFFLSYSH 412


>11_04_0288 - 15802010-15803506
          Length = 498

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 129 SQLQLKNLIVVKNWYKKYSHSVASALMALSVLSV 230
           S L  K+LIV+KN Y+     VA A +  S+ S+
Sbjct: 268 SSLHRKHLIVIKNTYEVVIDKVAWATLCASLRSI 301


>09_04_0008 +
           13651997-13652072,13652440-13652541,13653138-13653142,
           13653970-13654188,13654686-13654901,13654989-13655078,
           13656307-13656507
          Length = 302

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 105 STYLKVLFSQLQLKNLIVVKNWYKKYSHSVASAL 206
           ST ++V+ ++ ++    +   +YKKY  S+A A+
Sbjct: 250 STLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAI 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,339,991
Number of Sequences: 37544
Number of extensions: 133312
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)