Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f02
         (372 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   4.9  
DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.      22   8.5  
AY724808-1|AAW50317.1|  206|Anopheles gambiae G protein alpha su...    22   8.5  
AY724807-1|AAW50316.1|  127|Anopheles gambiae G protein alpha su...    22   8.5  
AY724806-1|AAW50315.1|  163|Anopheles gambiae G protein alpha su...    22   8.5  
AY724805-1|AAW50314.1|  162|Anopheles gambiae G protein alpha su...    22   8.5  
AY724804-1|AAW50313.1|  163|Anopheles gambiae G protein alpha su...    22   8.5  
AY724803-1|AAW50312.1|  162|Anopheles gambiae G protein alpha su...    22   8.5  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    22   8.5  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 99  RLKTLFYKQTFLLKNNCISLFCCTGVY 19
           R KTLFY    +L    IS  C    Y
Sbjct: 229 RRKTLFYTVNLILPTVLISFLCVLVFY 255


>DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 217 VTSIIFLVALSEYDQILF 234


>AY724808-1|AAW50317.1|  206|Anopheles gambiae G protein alpha
           subunit AgGq6 protein.
          Length = 206

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 74  VTSIIFLVALSEYDQILF 91


>AY724807-1|AAW50316.1|  127|Anopheles gambiae G protein alpha
           subunit AgGq5 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 31  VTSIIFLVALSEYDQILF 48


>AY724806-1|AAW50315.1|  163|Anopheles gambiae G protein alpha
           subunit AgGq4 protein.
          Length = 163

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 31  VTSIIFLVALSEYDQILF 48


>AY724805-1|AAW50314.1|  162|Anopheles gambiae G protein alpha
           subunit AgGq3 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 30  VTSIIFLVALSEYDQILF 47


>AY724804-1|AAW50313.1|  163|Anopheles gambiae G protein alpha
           subunit AgGq2 protein.
          Length = 163

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 31  VTSIIFLVALSEYDQILF 48


>AY724803-1|AAW50312.1|  162|Anopheles gambiae G protein alpha
           subunit AgGq1 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  VYKIVFLNALSTYLKVLF 128
           V  I+FL ALS Y ++LF
Sbjct: 30  VTSIIFLVALSEYDQILF 47


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  RSFYLPKSIIFSTSA*KSN 154
           +SF+  + +I ST A KSN
Sbjct: 138 QSFFFEQEVIVSTDAAKSN 156


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,072
Number of Sequences: 2352
Number of extensions: 5933
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 28374390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)