Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f02
         (372 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT016080-1|AAV36965.1| 1313|Drosophila melanogaster LP01489p pro...    27   6.0  
BT016033-1|AAV36918.1| 1325|Drosophila melanogaster RE02556p pro...    27   6.0  
AY375489-1|AAQ75368.1| 1210|Drosophila melanogaster loner ISO3 p...    27   6.0  
AY375488-1|AAQ75367.1| 1313|Drosophila melanogaster loner ISO2 p...    27   6.0  
AY375487-1|AAQ75366.1| 1325|Drosophila melanogaster loner ISO1 p...    27   6.0  
AY058333-1|AAL13562.1| 1082|Drosophila melanogaster GH10594p pro...    27   6.0  
AE014296-3465|ABI31265.1| 1210|Drosophila melanogaster CG32434-P...    27   6.0  
AE014296-3464|AAS65082.1| 1313|Drosophila melanogaster CG32434-P...    27   6.0  
AE014296-3463|AAF51675.2| 1325|Drosophila melanogaster CG32434-P...    27   6.0  

>BT016080-1|AAV36965.1| 1313|Drosophila melanogaster LP01489p
           protein.
          Length = 1313

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 860 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 891


>BT016033-1|AAV36918.1| 1325|Drosophila melanogaster RE02556p
           protein.
          Length = 1325

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 872 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 903


>AY375489-1|AAQ75368.1| 1210|Drosophila melanogaster loner ISO3
           protein.
          Length = 1210

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 757 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 788


>AY375488-1|AAQ75367.1| 1313|Drosophila melanogaster loner ISO2
           protein.
          Length = 1313

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 860 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 891


>AY375487-1|AAQ75366.1| 1325|Drosophila melanogaster loner ISO1
           protein.
          Length = 1325

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 872 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 903


>AY058333-1|AAL13562.1| 1082|Drosophila melanogaster GH10594p
           protein.
          Length = 1082

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 629 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 660


>AE014296-3465|ABI31265.1| 1210|Drosophila melanogaster CG32434-PC,
           isoform C protein.
          Length = 1210

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 757 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 788


>AE014296-3464|AAS65082.1| 1313|Drosophila melanogaster CG32434-PA,
           isoform A protein.
          Length = 1313

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 860 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 891


>AE014296-3463|AAF51675.2| 1325|Drosophila melanogaster CG32434-PB,
           isoform B protein.
          Length = 1325

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 342 IYYRRYCHCTIELILETRVSRLSRVAAFTLLM 247
           I+ +RYC C  +++   R S    V AF ++M
Sbjct: 872 IFSQRYCECNADIVGRLRSSDTIFVLAFAIIM 903


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,331
Number of Sequences: 53049
Number of extensions: 243369
Number of successful extensions: 615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 984962268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)