Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18f02
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite indu...    27   4.3  
U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical
           protein F58E10.4 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +2

Query: 212 PLCVKCLPEPKDIN---NVNAATRDNLET 289
           P+C K +P PKD+N    VN   ++N +T
Sbjct: 59  PICEKPVPTPKDVNVDQQVNEHIQNNCQT 87


>AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite
           inducible RNA associatedprotein (aip-1) protein.
          Length = 229

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +2

Query: 212 PLCVKCLPEPKDIN---NVNAATRDNLET 289
           P+C K +P PKD+N    VN   ++N +T
Sbjct: 86  PICEKPVPTPKDVNVDQQVNEHIQNNCQT 114


>U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical
           protein C06A5.6 protein.
          Length = 691

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 99  RLKTLFYKQTFLLKNNCISLFCCTGV 22
           +LKTLF+   F +++   +L+CC  V
Sbjct: 192 KLKTLFHLGKFTIESYPCALYCCRAV 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,840,908
Number of Sequences: 27780
Number of extensions: 138941
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)