Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e22
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   157   1e-39
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.5  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             25   7.9  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.9  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  157 bits (382), Expect = 1e-39
 Identities = 86/194 (44%), Positives = 112/194 (57%), Gaps = 1/194 (0%)
 Frame = -1

Query: 639 LAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTWSQGTSPL 463
           L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A        T P 
Sbjct: 19  LLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA--------TLPG 70

Query: 462 XXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIAKS 283
                              ++DLFGS                 + Y  KK+ KP  + KS
Sbjct: 71  TAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKS 129

Query: 282 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 103
            + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+EDDKVS+
Sbjct: 130 LVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSL 189

Query: 102 DLLTEKIQEFEDFV 61
           + L E+++ FED+V
Sbjct: 190 EALQEELEGFEDYV 203


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 472 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 582
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 175 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 282
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 153 INKLQIMCVIEDDKVSVDLLTEKIQEF 73
           INK Q+M   E ++ ++DLL++   EF
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF 177


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 461 PPVLNPRLPPQQRKTTMTT 405
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,487
Number of Sequences: 5004
Number of extensions: 53638
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)