Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e22
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   135   4e-32
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   132   2e-31
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   125   4e-29
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    31   0.89 

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  135 bits (326), Expect = 4e-32
 Identities = 84/191 (43%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
 Frame = -1

Query: 645 QXLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPAERKTWS 481
           + L  +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+     S   AE +   
Sbjct: 38  EYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVK 97

Query: 480 QGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKP 301
             ++                     DVDLFG                  +A A K S K 
Sbjct: 98  VESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVKASGKK 151

Query: 300 ALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIE 121
               KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I 
Sbjct: 152 KESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIV 211

Query: 120 DDKVSVDLLTE 88
           DD VSVD L E
Sbjct: 212 DDLVSVDSLIE 222


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  132 bits (320), Expect = 2e-31
 Identities = 84/205 (40%), Positives = 107/205 (52%), Gaps = 7/205 (3%)
 Frame = -1

Query: 645 QXLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTS- 469
           Q L+ K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+   +     + G + 
Sbjct: 19  QHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNL 78

Query: 468 ---PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPA 298
                                   D+DLFG                  +  A K S K  
Sbjct: 79  PGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKASSKKK 131

Query: 297 LIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIED 118
              KSS+LLDVKPWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI KLQIM  I D
Sbjct: 132 ESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVD 191

Query: 117 DKVSVD-LLTEKIQE--FEDFVPVC 52
           D VSVD L+ E + E    +FV  C
Sbjct: 192 DLVSVDSLIEEHLTEEPINEFVQSC 216


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  125 bits (301), Expect = 4e-29
 Identities = 81/194 (41%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
 Frame = -1

Query: 645 QXLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAER---K 490
           + L  +SY+SGY  S  D+ V+     AP+++  +V RW+  I      S   A+    K
Sbjct: 19  EYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVK 78

Query: 489 TWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKS 310
             S                         DVDLFG                  +A A K S
Sbjct: 79  VESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAAAVKAS 132

Query: 309 KKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMC 130
            K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM 
Sbjct: 133 GKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMM 192

Query: 129 VIEDDKVSVDLLTE 88
            I DD VSVD L E
Sbjct: 193 TIVDDLVSVDSLIE 206


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
 Frame = -1

Query: 645 QXLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 517
           Q L++KS +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 81  QDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,578
Number of Sequences: 37544
Number of extensions: 366967
Number of successful extensions: 893
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)