Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e22
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   177   5e-45
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   132   2e-31
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.60 
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    30   1.8  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    27   9.8  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  177 bits (432), Expect = 5e-45
 Identities = 99/197 (50%), Positives = 125/197 (63%), Gaps = 4/197 (2%)
 Frame = -1

Query: 639 LAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTWSQ--GTS 469
           LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +ASYT AERKTW+   G++
Sbjct: 18  LAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVASYTDAERKTWASAGGSA 77

Query: 468 PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIA 289
           P                      DLFGS               RL AYA+KK+KK   IA
Sbjct: 78  PAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEERLAAYAEKKAKKAGPIA 125

Query: 288 KSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKV 109
           KSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KV
Sbjct: 126 KSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKV 185

Query: 108 SVDLLTEKIQ-EFEDFV 61
           SVD L EKI  +FED V
Sbjct: 186 SVDDLIEKITGDFEDHV 202


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  132 bits (319), Expect = 2e-31
 Identities = 69/114 (60%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
 Frame = -1

Query: 399 DLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 220
           DLFGS               RL AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 219 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFV 61
           VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI  +FED V
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHV 252


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 498 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 635
           QP CM   + + VV+     PAP Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -1

Query: 282 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 103
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y   ++     I    V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489

Query: 102 DLLTEK 85
             +T K
Sbjct: 490 HFITPK 495


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -1

Query: 207 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKIQEFEDFV 61
           E E  L G+  LVPV    N+LQI+C       DD V +   T +  E  D +
Sbjct: 14  EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSI 66


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 VVFDDTHNLQFIYAIPNRHKFGGSPEKAFHFNSAYLVFHF 234
           VV+DD +       +P    F   P K+F    AY VFHF
Sbjct: 832 VVYDDMNVKNTSVVVPIGGNFNNLP-KSFQLGDAYKVFHF 870


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 498 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 635
           QP CM   + + VV+     PA  Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 543  HVLRWYNQIASYTPAERKTWSQGTSP 466
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 181 LQTCACWVWHK*TANYVCH 125
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 181 LQTCACWVWHK*TANYVCH 125
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 199 FHFNSAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFL 378
           FHF+   +++  +     + W  + ++  + +  ++L ++V I    F+  SF+  IL L
Sbjct: 391 FHFDIQLILYAAIFAFLSLTWPSVFKSSNIISNKYYLPVMVRIHVVLFYFGSFASNILPL 450

Query: 379 V 381
           V
Sbjct: 451 V 451


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 543  HVLRWYNQIASYTPAERKTWSQGTSP 466
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,557
Number of Sequences: 27780
Number of extensions: 308686
Number of successful extensions: 880
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)