Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e20
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    28   1.2  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   6.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   6.4  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   8.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   8.5  

>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 540 WKTLLLRQVPRQKKT-TKKRINLKTIKIVKKMMMPECPL 427
           W ++LL  VP++K + TKKR  L + K +K   +  CP+
Sbjct: 42  WNSILLA-VPKKKTSYTKKRSRLLSGKALKDKTVNRCPI 79


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 220 KKKQNNGNETTNFIKKFVLQFRTNLMPNS 306
           +KK N+ NE  N+ +KF  ++    MP+S
Sbjct: 77  RKKLNSENELPNYGEKFTHKYDNQDMPDS 105


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 561 LKPSSRHWKTLLLRQVPRQKKTTKKRINLKTIKIVKKMMMPECPLINLM 415
           LK     W T+     PR+  TT++ +   T++ +   + P+  LI L+
Sbjct: 212 LKTDGGRWPTIWAEDTPRELVTTRRELLKWTVEFMS--VAPKKQLIRLL 258


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 412 LTLFLITIFIYFVSVNVMLVLH 347
           LT+F +  FI+  SV V++V H
Sbjct: 286 LTIFCLNAFIFAYSVGVVIVSH 307


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 416 CINPLPDNNFYIFCKR 369
           C + LPDN  Y FC++
Sbjct: 657 CYSSLPDNVIYFFCEQ 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,428
Number of Sequences: 5004
Number of extensions: 32680
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)