Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e20
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0184 - 14825142-14825551,14826163-14826280                       30   1.2  
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930...    28   5.0  
07_02_0032 - 12037507-12038435,12038475-12038586,12038912-120391...    28   6.6  
05_03_0214 + 10345898-10346728                                         28   6.6  
07_03_0655 - 20312389-20312560,20312785-20312936,20313049-203132...    27   8.7  
05_03_0432 - 13971574-13972305                                         27   8.7  

>07_03_0184 - 14825142-14825551,14826163-14826280
          Length = 175

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 573 IRETLKPSSRHWKTLLLRQVPRQK 502
           +++T+ PS+ HWKTL+   +P +K
Sbjct: 132 VKKTMFPSNCHWKTLVKSSIPAKK 155


>11_04_0162 +
           14291835-14292281,14292330-14292697,14292836-14293050,
           14293090-14294129
          Length = 689

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 570 RETLKPSSRHWKTLLLRQVPRQKKTTKKRINLKTIKIVKKMM--MPECPLIN 421
           +ET+ P +R+WKT +   VP +K     +  L +    KK+    P+ P ++
Sbjct: 628 KETMMPRNRYWKTPVKSPVPAKKLEQPAQKKLSSAPKPKKVWKEKPKTPALS 679


>07_02_0032 -
           12037507-12038435,12038475-12038586,12038912-12039199,
           12039395-12039622
          Length = 518

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 570 RETLKPSSRHWKTLLLRQVPRQK 502
           +ET  P +R+WKTL+    P +K
Sbjct: 494 KETTMPRNRYWKTLVKSSTPAKK 516


>05_03_0214 + 10345898-10346728
          Length = 276

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 570 RETLKPSSRHWKTLLLRQVPRQK 502
           +ET  P +R+W+TL+   VP +K
Sbjct: 216 KETTMPRNRYWRTLVKSPVPAKK 238


>07_03_0655 -
           20312389-20312560,20312785-20312936,20313049-20313207,
           20313282-20313531,20313627-20313743,20313842-20313907,
           20314008-20314183
          Length = 363

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 379 FVSVNVMLVLHYC*TAASTYKYQSENWALSLY 284
           F S+N   +LH+   AA+   +  +NWAL ++
Sbjct: 156 FKSLNHHQLLHHASAAAAAAAHSKKNWALGIF 187


>05_03_0432 - 13971574-13972305
          Length = 243

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 570 RETLKPSSRHWKTLLLRQVPRQK 502
           +ET  P +R+W+TL+   +P +K
Sbjct: 182 KETTMPRNRYWRTLIKPTIPAKK 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,179,235
Number of Sequences: 37544
Number of extensions: 173729
Number of successful extensions: 345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)