Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e20
         (601 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY364242-1|AAQ76801.1|  582|Homo sapiens hypothetical protein pr...    31   4.1  
AL353796-1|CAH72262.1|  582|Homo sapiens novel protein protein.        31   4.1  
AL161651-3|CAI14218.1|  582|Homo sapiens novel protein protein.        31   4.1  
AK001348-1|BAA91641.1|  582|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AB194709-1|BAD98252.1|  582|Homo sapiens mitochondrial polyA pol...    31   4.1  
BC061703-1|AAH61703.1|  582|Homo sapiens PAP associated domain c...    30   5.4  

>AY364242-1|AAQ76801.1|  582|Homo sapiens hypothetical protein
           protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 597 RRKXHLLQIRETLKPS---SRHWK--TLLLRQVPRQKKTTKKRINLKTIKIVKKMM 445
           R    +LQ  +T +PS   +R W   +LLL   P +K  TKK+ N   I+ VK ++
Sbjct: 503 RESAWILQQEDTDRPSISSNRPWGLVSLLLPSAPNRKSFTKKKSNKFAIETVKNLL 558


>AL353796-1|CAH72262.1|  582|Homo sapiens novel protein protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 597 RRKXHLLQIRETLKPS---SRHWK--TLLLRQVPRQKKTTKKRINLKTIKIVKKMM 445
           R    +LQ  +T +PS   +R W   +LLL   P +K  TKK+ N   I+ VK ++
Sbjct: 503 RESAWILQQEDTDRPSISSNRPWGLVSLLLPSAPNRKSFTKKKSNKFAIETVKNLL 558


>AL161651-3|CAI14218.1|  582|Homo sapiens novel protein protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 597 RRKXHLLQIRETLKPS---SRHWK--TLLLRQVPRQKKTTKKRINLKTIKIVKKMM 445
           R    +LQ  +T +PS   +R W   +LLL   P +K  TKK+ N   I+ VK ++
Sbjct: 503 RESAWILQQEDTDRPSISSNRPWGLVSLLLPSAPNRKSFTKKKSNKFAIETVKNLL 558


>AK001348-1|BAA91641.1|  582|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10486 fis, clone NT2RP2000205. ).
          Length = 582

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 597 RRKXHLLQIRETLKPS---SRHWK--TLLLRQVPRQKKTTKKRINLKTIKIVKKMM 445
           R    +LQ  +T +PS   +R W   +LLL   P +K  TKK+ N   I+ VK ++
Sbjct: 503 RESAWILQQEDTDRPSISSNRPWGLVSLLLPSAPNRKSFTKKKSNKFAIETVKNLL 558


>AB194709-1|BAD98252.1|  582|Homo sapiens mitochondrial polyA
           polymerase protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 597 RRKXHLLQIRETLKPS---SRHWK--TLLLRQVPRQKKTTKKRINLKTIKIVKKMM 445
           R    +LQ  +T +PS   +R W   +LLL   P +K  TKK+ N   I+ VK ++
Sbjct: 503 RESAWILQQEDTDRPSISSNRPWGLVSLLLPSAPNRKSFTKKKSNKFAIETVKNLL 558


>BC061703-1|AAH61703.1|  582|Homo sapiens PAP associated domain
           containing 1 protein.
          Length = 582

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -2

Query: 597 RRKXHLLQIRETLKPS---SRHWK--TLLLRQVPRQKKTTKKRINLKTIKIVKKMM 445
           R    +LQ  +T +PS   +R W   +LLL   P +K  TKK+ N   I+ VK ++
Sbjct: 503 RESAWILQQEDTDRPSISSNRPWGLVSLLLPSAPNRKSFTKKKNNKFAIETVKNLL 558


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,173,011
Number of Sequences: 237096
Number of extensions: 1047797
Number of successful extensions: 1509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)