Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e14
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    25   0.36 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.48 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 418 EFGTVTKNAVVEIRSRNQRRTSARKSPAGLIDGG 317
           EFG   KN  ++ +S  QR    R SP   I+GG
Sbjct: 93  EFGKEYKNGFIKGQSEVQRGPGGRLSPYFGINGG 126


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 194 CVPSLQRFYSRYHIPRIIENIPHSSS 117
           C+ S + +YS+++  +  + IP SSS
Sbjct: 379 CLGSTETYYSKHNTQQFTQYIPESSS 404


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 384 RSEVEINEELQRGNLLPVSSTVVPLPF 304
           RS ++INEE+QR      ++ V P PF
Sbjct: 482 RSGIDINEEIQRNREFYKNADVRP-PF 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,148
Number of Sequences: 438
Number of extensions: 3054
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)