Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e12
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   237   9e-64
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   237   9e-64
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   0.91 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    28   1.2  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   1.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   4.9  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   6.4  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   6.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.5  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  237 bits (580), Expect = 9e-64
 Identities = 105/156 (67%), Positives = 137/156 (87%)
 Frame = -2

Query: 482 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 303
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 123
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 122 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDIN 15
           +A+ LSG+VKEILGTA SVGCTV+G+ PHD+  +I+
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEID 156


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  237 bits (580), Expect = 9e-64
 Identities = 105/156 (67%), Positives = 137/156 (87%)
 Frame = -2

Query: 482 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 303
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 123
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 122 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDIN 15
           +A+ LSG+VKEILGTA SVGCTV+G+ PHD+  +I+
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEID 156


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 46   LPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMP-TTSSREMLPL 183
            LPS + P    V R+  ++PE     DLFL I A+   TSS+ +LPL
Sbjct: 1465 LPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = -2

Query: 314 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIM 135
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 134 RNRSMARYLSGSVKEI 87
           RNR     L  +V  I
Sbjct: 83  RNRKARENLKVNVSSI 98


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 49  PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIF 195
           P+  +P   + PR   T  +R   + + +     P TSSR  LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 180 RQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 88
           + H+  +C  HC  H  +   PVP   +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 186 TQRQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 88
           T+  H P +   HC  H  + + PVP   +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 204 FTVTGRLLKGSDDKGCCR 257
           F VTG +L  S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 67  TDCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIFFCFLRSRG 219
           T+ ++        E Y    LFL+ F + TT    +L L +  FC   + G
Sbjct: 2   TEMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 403 DDVAPTSPPTHRKFTILI 456
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,952
Number of Sequences: 5004
Number of extensions: 52394
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)