Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e11
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...   180   1e-46
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   4.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   8.4  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score =  180 bits (439), Expect = 1e-46
 Identities = 88/216 (40%), Positives = 134/216 (62%)
 Frame = -3

Query: 727 KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
           K++KL++ FY+SDIIVASPLGLR+ +G +G++ RD D+L+SIEI ++DQA   +MQNW  
Sbjct: 332 KTVKLFSQFYNSDIIVASPLGLRLAIGNKGDKKRDLDYLSSIEIAMVDQAHALVMQNWEH 391

Query: 547 XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                      PK+ H  DFSRVR W ++  A+Y RQT++F+     +I S  +    N 
Sbjct: 392 IECIFDELNGLPKEAHGCDFSRVRPWYLDQQARYMRQTILFSQYNNLDINSFFSHYMSNI 451

Query: 367 AGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSH 188
           AGKV   + +  G + ++  ++ Q F R +  + ++  +ARF YF   +L + +    S 
Sbjct: 452 AGKVKFRSLLH-GVLNRLGYKVTQTFVRISVDSIIKVPDARFSYFTGSILVQLKKYSQSG 510

Query: 187 TLIYVPSYFDYVRIRNYFKKEDISFVQICEYSKVGD 80
            L+Y+PSYFD+VR+RNY  +E I++  I EYS V D
Sbjct: 511 ILVYIPSYFDFVRVRNYMDEEGINYSAISEYSSVSD 546


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 229 KEVLPKQRDTLMSHTLIYVPSYFDY 155
           +E+LPK    L S T ++  SY D+
Sbjct: 239 REILPKIHSKLESETFVWPSSYIDF 263


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 274  STALESAEARFEYFIKEVLPKQRDTLMSHTLI-YVPSYFDYV 152
            S+  +S  A  + F K+ + K    L S +L+ + P+YFDY+
Sbjct: 1693 SSGGKSGSAFLKTFDKKYILKVLSRLESDSLLNFAPAYFDYI 1734


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 727 KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEI 596
           K  +++  FY + IIV+  LG     G    + R Y F+ S+ I
Sbjct: 467 KYKRVHWGFYLASIIVSLGLGFAFTEGWHDIQIRSYGFVVSMVI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,301
Number of Sequences: 5004
Number of extensions: 54059
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)